NHX format visualization

[Jacques Dainat]

I don't find any way to visualize/display the NHX tags contained in my trees.

So, I tried  to convert my NHX formatted trees to phyloXML using phyloxml_converter with the -f=dummy option  but all my tags and value disappeared from the xml outputs.

Any way to fix that ?

Best regards,

/Jacques

[Christian Zmasek]

Hi, Jacques:

What NHX tags are you using?

I wonder if you could send me your NHX formatted file (at cmzm...@yahoo.com).

Christian 

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[Jacques Dainat]

Hi Christian,

Thank you for your help.

I use my own NHX tags. I mean, to my knowledge there is no controlled vocabulary mandatory to use as nhx tag.

I have enclosed the tree.

Best regards,

Jacques

--

Jacques Dainat

[Christian Zmasek]

Hi, Jacques:

Actually, which NHX tags Archaeopteryx can display is very much controlled.

See: https://sites.google.com/site/cmzmasek/home/software/forester/nhx

I recommend you to look into the "property" element of phyloXML: 

http://www.phyloxml.org/documentation/version_1.20/phyloxml_xsd.html#Property

You can see some examples here:

http://www.phyloxml.org/examples_syntax/phyloxml_syntax_example_2.html

Chris