NHX format visualization

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Jacques Dainat

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Aug 30, 2018, 1:04:05 AM8/30/18
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I don't find any way to visualize/display the NHX tags contained in my trees.
So, I tried  to convert my NHX formatted trees to phyloXML using phyloxml_converter with the -f=dummy option  but all my tags and value disappeared from the xml outputs.

Any way to fix that ?

Best regards,

/Jacques

Christian Zmasek

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Aug 31, 2018, 2:03:45 PM8/31/18
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Hi, Jacques:

What NHX tags are you using?
I wonder if you could send me your NHX formatted file (at cmzm...@yahoo.com).

Christian 


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Jacques Dainat

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Sep 5, 2018, 3:44:09 AM9/5/18
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Hi Christian,
Thank you for your help.

I use my own NHX tags. I mean, to my knowledge there is no controlled vocabulary mandatory to use as nhx tag.
I have enclosed the tree.

Best regards,

Jacques

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Jacques Dainat
OGanalyze_gene_flux_anonymized.nhx

Christian Zmasek

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Sep 6, 2018, 1:25:01 PM9/6/18
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Hi, Jacques:

Actually, which NHX tags Archaeopteryx can display is very much controlled.

I recommend you to look into the "property" element of phyloXML: 

You can see some examples here:

Chris
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