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Archaeopteryx
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Mitch _
5/30/19
List of Samples in a Branch
I am viewing results generated by TASSEL Cladogram, in Archaeopteryx. Is it possible to generate a
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List of Samples in a Branch
I am viewing results generated by TASSEL Cladogram, in Archaeopteryx. Is it possible to generate a
5/30/19
Migun Shakya
12/26/18
how to cite Archaeopteryx.js?
Hi, I was wondering if there is a way to cite Archaeopteryx? Thank you
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how to cite Archaeopteryx.js?
Hi, I was wondering if there is a way to cite Archaeopteryx? Thank you
12/26/18
Jacques Dainat
, …
Christian Zmasek
4
9/6/18
NHX format visualization
Hi, Jacques: Actually, which NHX tags Archaeopteryx can display is very much controlled. See: https:/
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NHX format visualization
Hi, Jacques: Actually, which NHX tags Archaeopteryx can display is very much controlled. See: https:/
9/6/18
Sergei Shalygin
8/3/18
Nodes graphical representation
Hey you guys, Is is possible to align nodes as in the attachment in desktop version for Windows. It
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Nodes graphical representation
Hey you guys, Is is possible to align nodes as in the attachment in desktop version for Windows. It
8/3/18
Matt Melnicki
,
Christian Zmasek
2
6/21/18
what are the shortcuts / hotkeys?
Good point. I summarized the hotkeys under "Keyboard Shortcuts (Hotkeys)" at: https://sites
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what are the shortcuts / hotkeys?
Good point. I summarized the hotkeys under "Keyboard Shortcuts (Hotkeys)" at: https://sites
6/21/18
HBBA
9/2/17
Export to pdf
How I can export multiple different trees (in phyloxml) to different pdf files, by Archaeopteryx? The
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Export to pdf
How I can export multiple different trees (in phyloxml) to different pdf files, by Archaeopteryx? The
9/2/17
HBBA
9/2/17
How I can export multiple different trees (in phyloxml) to different pdf files, by Archaeopteryx?
How I can export multiple different trees (in phyloxml) to different pdf files, by Archaeopteryx? The
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How I can export multiple different trees (in phyloxml) to different pdf files, by Archaeopteryx?
How I can export multiple different trees (in phyloxml) to different pdf files, by Archaeopteryx? The
9/2/17
Natalia Erazo
4/6/17
Launching Archaeopteryx in Mac OS x
I have a mac and would like to use Archaeopteryx. The website gives instructions to launch it in
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Launching Archaeopteryx in Mac OS x
I have a mac and would like to use Archaeopteryx. The website gives instructions to launch it in
4/6/17
Christian Zmasek
1/20/17
Version 1.00 of Archaeopteryx-js released
Version 1.00 of Archaeopteryx-js released: https://github.com/cmzmasek/archaeopteryx-js -Chris-
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github
release
Version 1.00 of Archaeopteryx-js released
Version 1.00 of Archaeopteryx-js released: https://github.com/cmzmasek/archaeopteryx-js -Chris-
1/20/17
Tom Hatton
,
Christian Zmasek
2
8/1/16
Fonts in menusand UI
Hi, Tom: At this point, only the font sizes for the trees being displayed can be changed, not for the
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Fonts in menusand UI
Hi, Tom: At this point, only the font sizes for the trees being displayed can be changed, not for the
8/1/16
Redmar van den Berg
2
7/19/16
Creating an ubuntu snap package for archaeopteryx
I've been trying to create a snap package (http://snapcraft.io/) to make it easy to install
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Creating an ubuntu snap package for archaeopteryx
I've been trying to create a snap package (http://snapcraft.io/) to make it easy to install
7/19/16
Christian Zmasek
6/23/16
Announcement
Version 0.9911 beta released
Hi, all: Version 0.9911 beta has been released. It restores the ability to read trees from TreeBase
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beta
release
Announcement
Version 0.9911 beta released
Hi, all: Version 0.9911 beta has been released. It restores the ability to read trees from TreeBase
6/23/16
Jean-Baka Domelevo Entfellner
,
Christian Zmasek
2
6/23/16
Colouring bug in Archaeoptreryx (colouring subtree while search active)
Thank you. Good point. This "unexpected" behavior was a feature requested by a user. Now (
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Colouring bug in Archaeoptreryx (colouring subtree while search active)
Thank you. Good point. This "unexpected" behavior was a feature requested by a user. Now (
6/23/16
David Kerk
6/2/15
Change of significant digits in Actx display of MrBayes Nexus files
Hi All: Christian just helped me with this, so I am posting this for all to see the solution. No need
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Change of significant digits in Actx display of MrBayes Nexus files
Hi All: Christian just helped me with this, so I am posting this for all to see the solution. No need
6/2/15
Christian Zmasek
5/14/15
forester is now hosted on GitHub
As the subject says, forester is now hosted on GitHub: https://github.com/cmzmasek/forester
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git
github
source
forester is now hosted on GitHub
As the subject says, forester is now hosted on GitHub: https://github.com/cmzmasek/forester
5/14/15
Daniel Lang
,
Christian
3
5/13/15
confidence/evalues in confidence attributes of domain architectures
Hi, I fixed this issue. You can download the newest version here: https://github.com/cmzmasek/
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confidence/evalues in confidence attributes of domain architectures
Hi, I fixed this issue. You can download the newest version here: https://github.com/cmzmasek/
5/13/15
Connor Skennerton
,
Christian Zmasek
4
3/31/15
Viewing huge trees
Hi, Connor: I think I did most I could to improve Archaeopteryx' performance. To improve it
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Viewing huge trees
Hi, Connor: I think I did most I could to improve Archaeopteryx' performance. To improve it
3/31/15
Jean-Baka Domelevo Entfellner
,
Christian
3
10/22/14
Searching with regular expressions in Archaeopteryx
Fantastic, Christian, thanks so much for the fast implementation, you are something like my new hero!
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Searching with regular expressions in Archaeopteryx
Fantastic, Christian, thanks so much for the fast implementation, you are something like my new hero!
10/22/14
Jean-Baka
10/6/14
search function: possible to search using a regular expression?
Hello, Let's say I want to highlight all the taxa whose name starts with the string "B.
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search function: possible to search using a regular expression?
Hello, Let's say I want to highlight all the taxa whose name starts with the string "B.
10/6/14
Abolfazl Masoudi
,
Christian
2
7/8/14
Java (TM)
Hi, Could you provide more information? For example, what program or webserver are you using? How did
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Java (TM)
Hi, Could you provide more information? For example, what program or webserver are you using? How did
7/8/14
Ashfaq Ahmad
2/19/14
Loading my tree file
Hello All, I have just downloaded forester_1028.jar on my window 7. I can open it via double click.
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Loading my tree file
Hello All, I have just downloaded forester_1028.jar on my window 7. I can open it via double click.
2/19/14
Anting Xu
,
Christian Zmasek
2
9/1/13
What does "speciation_or_duplication" mean?
Hi Anting, speciation_or_duplication is needed in cases where the species tree contains polytomies (
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What does "speciation_or_duplication" mean?
Hi Anting, speciation_or_duplication is needed in cases where the species tree contains polytomies (
9/1/13
Hrishikesh Lokhande
6/7/13
Extract colored trees in Archaeoptreyx
Hello, I am working on Archaeoptreyx, my question is basically related to the use of the applet. I
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Extract colored trees in Archaeoptreyx
Hello, I am working on Archaeoptreyx, my question is basically related to the use of the applet. I
6/7/13
gpenn
, …
Christian Zmasek
7
5/2/13
Graphics Export: Use Current Image Size for Export (Not Working?)
No, due to security restrictions, Applets normally don't have access to the user's file-
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Graphics Export: Use Current Image Size for Export (Not Working?)
No, due to security restrictions, Applets normally don't have access to the user's file-
5/2/13
sunny_s...@126.com
,
Christian Zmasek
2
2/7/13
how to execute Archaeopteryx
Hi, How did you try to launch it? Via command line, or by clicking on the .jar file? Christian On Mon
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how to execute Archaeopteryx
Hi, How did you try to launch it? Via command line, or by clicking on the .jar file? Christian On Mon
2/7/13
Christian
4/2/12
Announcement
Archaeopteryx adds capability to launch BLAST on NCBI website
Archaeopteryx [0.970 beta BG (2012.03.28)] can now be used to launch BLAST searches on the NCBI
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Announcement
Archaeopteryx adds capability to launch BLAST on NCBI website
Archaeopteryx [0.970 beta BG (2012.03.28)] can now be used to launch BLAST searches on the NCBI
4/2/12
Juan Felipe Ortiz
,
Christian
2
2/10/12
vector/expression values color and automation of graphics generation
Hi, Juan: 1. No, at this point the colors and color limits for vector/ expresstion data cannot be
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vector/expression values color and automation of graphics generation
Hi, Juan: 1. No, at this point the colors and color limits for vector/ expresstion data cannot be
2/10/12
Roderick Nigel Finn
,
Christian
3
1/3/12
MrBayes 3.2 output not opened by Archeaopteryx
This issue should be fixed as of version 0.968. --Chris
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MrBayes 3.2 output not opened by Archeaopteryx
This issue should be fixed as of version 0.968. --Chris
1/3/12
Christian
1/3/12
Announcement
Archaeopteryx 0.968 beta BG (2012.01.03) released
Archaeopteryx 0.968 beta BG (2012.01.03) released. New Features: Correctly parses Mr. Bayes 3.2.0
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Announcement
Archaeopteryx 0.968 beta BG (2012.01.03) released
Archaeopteryx 0.968 beta BG (2012.01.03) released. New Features: Correctly parses Mr. Bayes 3.2.0
1/3/12
Hervé Ménager
9/12/11
Another ArchaeopteryxE applet modification proposal
Dear Christian & Archaeopteryx users, I would like to submit a modification proposal for the
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Another ArchaeopteryxE applet modification proposal
Dear Christian & Archaeopteryx users, I would like to submit a modification proposal for the
9/12/11