First please double check that the correct php.ini file is loaded (php.exe --ini), because the error reports limit of size 128MB. perhaps another php.ini is being loaded for cli scipts?
Or, if you want to explicitly define memory limit only for one execution, you can use -d option of php:
php.exe -dmemory_limit=512M apigen.php ....
When I was building ZF2 on my hosting with old version of PHP, it needed about 600MB of memory.
Good luck
Jan
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