intallation problem
Shashank
1 error generated.
error: command '/usr/bin/clang' failed with exit code 1
----------------------------------------
ERROR: Failed building wheel for pandas
Running setup.py clean for pandas
Building wheel for datrie (PEP 517) ... error
ERROR: Command errored out with exit status 1:
command: /Users/shashankgupta/opt/miniconda3/bin/python /Users/shashankgupta/opt/miniconda3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /var/folders/22/s23tx42s4qn8g83vt3q1w7gw0000gn/T/tmpe5hxkth0
cwd: /private/var/folders/22/s23tx42s4qn8g83vt3q1w7gw0000gn/T/pip-install-ut1_02kn/datrie_6ebd5a4695414250bc996b68cc8b0fd8
Complete output (36 lines):
running bdist_wheel
running build
running build_clib
building 'datrie' library
creating build
creating build/temp.macosx-10.9-x86_64-3.9
creating build/temp.macosx-10.9-x86_64-3.9/libdatrie
creating build/temp.macosx-10.9-x86_64-3.9/libdatrie/datrie
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/shashankgupta/opt/miniconda3/include -arch x86_64 -fPIC -O2 -isystem /Users/shashankgupta/opt/miniconda3/include -arch x86_64 -Ilibdatrie -c libdatrie/datrie/alpha-map.c -o build/temp.macosx-10.9-x86_64-3.9/libdatrie/datrie/alpha-map.o
libdatrie/datrie/alpha-map.c:500:21: warning: comparison of integers of different signs: 'TrieIndex' (aka 'int') and 'AlphaChar' (aka 'unsigned int') [-Wsign-compare]
if (alpha_begin <= ac && ac <= alpha_map->alpha_end)
~~~~~~~~~~~ ^ ~~
1 warning generated.
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/shashankgupta/opt/miniconda3/include -arch x86_64 -fPIC -O2 -isystem /Users/shashankgupta/opt/miniconda3/include -arch x86_64 -Ilibdatrie -c libdatrie/datrie/darray.c -o build/temp.macosx-10.9-x86_64-3.9/libdatrie/datrie/darray.o
libdatrie/datrie/darray.c:239:22: warning: comparison of integers of different signs: 'TrieIndex' (aka 'int') and 'unsigned long' [-Wsign-compare]
if (d->num_cells > SIZE_MAX / sizeof (DACell))
~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~
1 warning generated.
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/shashankgupta/opt/miniconda3/include -arch x86_64 -fPIC -O2 -isystem /Users/shashankgupta/opt/miniconda3/include -arch x86_64 -Ilibdatrie -c libdatrie/datrie/dstring.c -o build/temp.macosx-10.9-x86_64-3.9/libdatrie/datrie/dstring.o
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/shashankgupta/opt/miniconda3/include -arch x86_64 -fPIC -O2 -isystem /Users/shashankgupta/opt/miniconda3/include -arch x86_64 -Ilibdatrie -c libdatrie/datrie/fileutils.c -o build/temp.macosx-10.9-x86_64-3.9/libdatrie/datrie/fileutils.o
libdatrie/datrie/fileutils.c:103:52: warning: comparison of integers of different signs: 'unsigned long' and 'int' [-Wsign-compare]
return (fread (buff, sizeof (char), len, file) == len);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~
libdatrie/datrie/fileutils.c:109:53: warning: comparison of integers of different signs: 'unsigned long' and 'int' [-Wsign-compare]
return (fwrite (buff, sizeof (char), len, file) == len);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~
2 warnings generated.
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/shashankgupta/opt/miniconda3/include -arch x86_64 -fPIC -O2 -isystem /Users/shashankgupta/opt/miniconda3/include -arch x86_64 -Ilibdatrie -c libdatrie/datrie/tail.c -o build/temp.macosx-10.9-x86_64-3.9/libdatrie/datrie/tail.o
libdatrie/datrie/tail.c:144:22: warning: comparison of integers of different signs: 'TrieIndex' (aka 'int') and 'unsigned long' [-Wsign-compare]
if (t->num_tails > SIZE_MAX / sizeof (TailBlock))
~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1 warning generated.
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/shashankgupta/opt/miniconda3/include -arch x86_64 -fPIC -O2 -isystem /Users/shashankgupta/opt/miniconda3/include -arch x86_64 -Ilibdatrie -c libdatrie/datrie/trie-string.c -o build/temp.macosx-10.9-x86_64-3.9/libdatrie/datrie/trie-string.o
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/shashankgupta/opt/miniconda3/include -arch x86_64 -fPIC -O2 -isystem /Users/shashankgupta/opt/miniconda3/include -arch x86_64 -Ilibdatrie -c libdatrie/datrie/trie.c -o build/temp.macosx-10.9-x86_64-3.9/libdatrie/datrie/trie.o
/opt/concourse/worker/volumes/live/6bea4a75-e17e-40e6-5e22-5abf5d19cc88/volume/python-split_1621365874123/_build_env/bin/llvm-ar rcs build/temp.macosx-10.9-x86_64-3.9/libdatrie.a build/temp.macosx-10.9-x86_64-3.9/libdatrie/datrie/alpha-map.o build/temp.macosx-10.9-x86_64-3.9/libdatrie/datrie/darray.o build/temp.macosx-10.9-x86_64-3.9/libdatrie/datrie/dstring.o build/temp.macosx-10.9-x86_64-3.9/libdatrie/datrie/fileutils.o build/temp.macosx-10.9-x86_64-3.9/libdatrie/datrie/tail.o build/temp.macosx-10.9-x86_64-3.9/libdatrie/datrie/trie-string.o build/temp.macosx-10.9-x86_64-3.9/libdatrie/datrie/trie.o
error: command '/opt/concourse/worker/volumes/live/6bea4a75-e17e-40e6-5e22-5abf5d19cc88/volume/python-split_1621365874123/_build_env/bin/llvm-ar' failed: No such file or directory
----------------------------------------
ERROR: Failed building wheel for datrie
Successfully built anvio
Failed to build pandas datrie
ERROR: Could not build wheels for datrie which use PEP 517 and cannot be installed directly
Many thanks in advance for your help.
A. Murat Eren
--
Anvi'o Paper: https://peerj.com/articles/1319/
Project Page: http://merenlab.org/projects/anvio/
Code Repository: https://github.com/meren/anvio
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