Anvio7 Fresh install on Mac Catalina (10.15.7)

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Katie S

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Aug 11, 2021, 3:59:10 PM8/11/21
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I successfully installed anvio7 and the dependencies with no error.

When I go to the anvi-self-test suite mini I get the following:


Traceback (most recent call last):
  File "/Users/sputnik/miniconda3/envs/anvio-7/bin/anvi-init-bam", line 6, in <module>
    import pysam
  File "/Users/sputnik/miniconda3/envs/anvio-7/lib/python3.6/site-packages/pysam/__init__.py", line 5, in <module>
    from pysam.libchtslib import *
ImportError: dlopen(/Users/sputnik/miniconda3/envs/anvio-7/lib/python3.6/site-packages/pysam/libchtslib.cpython-36m-darwin.so, 2): Library not loaded: @rpath/libdeflate.so
  Referenced from: /Users/sputnik/miniconda3/envs/anvio-7/lib/libhts.1.8.dylib
  Reason: image not found


Config Error: According to the exit code ('1'), anvi'o suspects that something may have gone
              wrong while running your tests :/ We hope that the reason is clear to you from
              the lines above. But if you don't see anything obvious, and especially if the
              test ended up running until the end with reasonable looking final results, you
              shouldn't worry too much about this error. Life is short and we all can worry
              just a bit less.




I checked my pandas and have 0.25.1.
Conda is at 4.10.3

Thanks for your time,
Katie Sipes
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