I successfully installed anvio7 and the dependencies with no error.
When I go to the anvi-self-test suite mini I get the following:
Traceback (most recent call last):
File "/Users/sputnik/miniconda3/envs/anvio-7/bin/anvi-init-bam", line 6, in <module>
import pysam
File "/Users/sputnik/miniconda3/envs/anvio-7/lib/python3.6/site-packages/pysam/__init__.py", line 5, in <module>
from pysam.libchtslib import *
ImportError: dlopen(/Users/sputnik/miniconda3/envs/anvio-7/lib/python3.6/site-packages/pysam/
libchtslib.cpython-36m-darwin.so, 2): Library not loaded: @rpath/libdeflate.so
Referenced from: /Users/sputnik/miniconda3/envs/anvio-7/lib/libhts.1.8.dylib
Reason: image not found
Config Error: According to the exit code ('1'), anvi'o suspects that something may have gone
wrong while running your tests :/ We hope that the reason is clear to you from
the lines above. But if you don't see anything obvious, and especially if the
test ended up running until the end with reasonable looking final results, you
shouldn't worry too much about this error. Life is short and we all can worry
just a bit less.
I checked my pandas and have 0.25.1.
Conda is at 4.10.3
Thanks for your time,
Katie Sipes