anvi'o installation troubleshooting, WSL

[Kyle Wolf]

Figured I'd put this here in case anyone else encounters a similar issue. I'm installing Anvi'o on Windows 10 with the linux subsystem.

I followed the installation instructions here: https://anvio.org/install/

After installing the prerequisites, I was unable to run pip without sudo and was getting an error about a missing module. Pip would run without issue before installing the list of prereqs on the installation page. If I ran pip with sudo, the installation would fail while attempting to build the wheel for pandas.

Ultimately, I was able to fix the issue by following the instructions here: https://stackoverflow.com/questions/68261254/conda-error-sysconfigdata-x86-64-conda-linux-gnu

I'm not sure why/how the issue occurred. I did not encounter it when setting anvi'o up on our lab server despite identical commands and a fresh conda environment, but hopefully this helps someone with a similar issue in the future.

[A. Murat Eren (Meren)]

Thank you very much for reporting this, Kyle!

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A. Murat Eren (Meren) | he/him

https://merenlab.org | https://anvio.org | @merenbey

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Anvi'o Paper: https://peerj.com/articles/1319/
Project Page: http://merenlab.org/projects/anvio/
Code Repository: https://github.com/meren/anvio
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