Anuga-user Digest, Vol 76, Issue 2
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Today's Topics:
1. Re: Error while running runtests.py (Stephen Roberts)
2. Re: Error while running runtests.py (Maikel Issermann)
----------------------------------------------------------------------
Message: 1
Date: Sun, 17 May 2015 20:31:52 +1000
From: Stephen Roberts <stephen...@anu.edu.au>
Subject: Re: [Anuga-user] Error while running runtests.py
To: Maikel Issermann <m.iss...@zoho.com>,
anuga...@lists.sourceforge.net
Message-ID: <55586E18...@anu.edu.au>
Content-Type: text/plain; charset=windows-1252; format=flowed
Hi Maikel,
All the errors seem to have a common cause
line 1082, in save_args_to_cache
raise IOError(msg)
IOError: ERROR (caching): Could not open argsfile for writing:
The caching code tries to save to the ~/.python_cache directory by
default.
Could you check the permissions on the directory ~/.python_cache. It
should have write permission.
Cheers
Steve
On 17/05/2015 5:11 PM, Maikel Issermann wrote:
> Dear all,
>
> I am running several errors while testing my ANUGA installation. I don't
> understand the errors and thus cannot solve them. I hope somebody has a
> clue about the error cause and how to fix it.
>
> ANUGA is running on linux mint (ubuntu 14.04). I have netcdf-4.3.3.1 ;
> hdf5-1.8.9 zlib-1.2.8 and netCDF4-1.1.7.1 (python).
>
> Here is the error messages:
>
> Building, see build.log...
> Build OK
> Running unit tests for anuga
> NumPy version 1.8.2
> NumPy is installed in /usr/lib/python2.7/dist-packages/numpy
> Python version 2.7.6 (default, Mar 22 2014, 22:59:56) [GCC 4.8.2]
> nose version 1.3.1
> ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................E..................................................................................................................................................................................................................................................................................................................................................................................................................E.......................................E.........!
> .........
> ........EE............E..........................E..........................................................................................................................................................................................................
> ======================================================================
> ERROR:
> test_simple_interpolation_example_using_direct_interface_and_caching
> (test_interpolate.Test_Interpolate)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/tests/test_interpolate.py",
> line 270, in
> test_simple_interpolation_example_using_direct_interface_and_caching
> verbose=False)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
> line 141, in interpolate
> output_centroids=output_centroids)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
> line 321, in interpolate_block
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 371, in cache
> save_args_to_cache(CD,FN,args,kwargs,compression)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 1082, in save_args_to_cache
> raise IOError(msg)
> IOError: ERROR (caching): Could not open argsfile for writing:
> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_18_vertices,_6_triangles,_18_boundary_segments[732135140967954368]
>
> ======================================================================
> ERROR: test_get_flow_through_cross_section(self):
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_loadsave.py",
> line 170, in test_get_flow_through_cross_section_with_geo
> verbose=False)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/shallow_water_domain.py",
> line 1546, in get_flow_through_cross_section
> return cross_section.get_flow_through_cross_section()
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
> line 735, in get_flow_through_cross_section
> use_cache=True)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1777, in get_values
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1717, in get_interpolated_values
> use_cache=use_cache, verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
> line 321, in interpolate_block
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 371, in cache
> save_args_to_cache(CD,FN,args,kwargs,compression)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 1082, in save_args_to_cache
> raise IOError(msg)
> IOError: ERROR (caching): Could not open argsfile for writing:
> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_360_vertices,_120_triangles,_360_boundary_segments[9006059791549026239]
>
> ======================================================================
> ERROR: test_cross_section_class(self):
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_shallow_water_domain.py",
> line 1985, in test_cross_section_class
> Q = cross_section.get_flow_through_cross_section()
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
> line 735, in get_flow_through_cross_section
> use_cache=True)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1777, in get_values
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1717, in get_interpolated_values
> use_cache=use_cache, verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
> line 321, in interpolate_block
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 371, in cache
> save_args_to_cache(CD,FN,args,kwargs,compression)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 1082, in save_args_to_cache
> raise IOError(msg)
> IOError: ERROR (caching): Could not open argsfile for writing:
> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_360_vertices,_120_triangles,_360_boundary_segments[9006059791549026239]
>
> ======================================================================
> ERROR: test_get_energy_through_cross_section(self):
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_shallow_water_domain.py",
> line 1886, in test_get_energy_through_cross_section_with_geo
> verbose=False)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/shallow_water_domain.py",
> line 1580, in get_energy_through_cross_section
> return cross_section.get_energy_through_cross_section(kind)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
> line 780, in get_energy_through_cross_section
> w = stage.get_values(interpolation_points=self.midpoints,
> use_cache=True)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1777, in get_values
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1717, in get_interpolated_values
> use_cache=use_cache, verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
> line 321, in interpolate_block
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 371, in cache
> save_args_to_cache(CD,FN,args,kwargs,compression)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 1082, in save_args_to_cache
> raise IOError(msg)
> IOError: ERROR (caching): Could not open argsfile for writing:
> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_360_vertices,_120_triangles,_360_boundary_segments[9006059791549026239]
>
> ======================================================================
> ERROR: test_get_flow_through_cross_section(self):
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_shallow_water_domain.py",
> line 1801, in test_get_flow_through_cross_section_with_geo
> verbose=False)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/shallow_water_domain.py",
> line 1546, in get_flow_through_cross_section
> return cross_section.get_flow_through_cross_section()
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
> line 735, in get_flow_through_cross_section
> use_cache=True)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1777, in get_values
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1717, in get_interpolated_values
> use_cache=use_cache, verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
> line 321, in interpolate_block
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 371, in cache
> save_args_to_cache(CD,FN,args,kwargs,compression)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 1082, in save_args_to_cache
> raise IOError(msg)
> IOError: ERROR (caching): Could not open argsfile for writing:
> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_360_vertices,_120_triangles,_360_boundary_segments[9006059791549026239]
>
> ======================================================================
> ERROR: test_inflow_using_flowline
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_shallow_water_domain.py",
> line 7952, in test_inflow_using_flowline
> [200.0, 20.0]])
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/shallow_water_domain.py",
> line 1546, in get_flow_through_cross_section
> return cross_section.get_flow_through_cross_section()
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
> line 735, in get_flow_through_cross_section
> use_cache=True)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1777, in get_values
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1717, in get_interpolated_values
> use_cache=use_cache, verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
> line 321, in interpolate_block
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 371, in cache
> save_args_to_cache(CD,FN,args,kwargs,compression)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 1082, in save_args_to_cache
> raise IOError(msg)
> IOError: ERROR (caching): Could not open argsfile for writing:
> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_2400_vertices,_800_triangles,_2400_boundary_segments[1280555080918628026]
>
> ======================================================================
> ERROR: test_volumetric_balance_computation
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_shallow_water_domain.py",
> line 7410, in test_volumetric_balance_computation
> [200.0, 20.0]])
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/shallow_water_domain.py",
> line 1546, in get_flow_through_cross_section
> return cross_section.get_flow_through_cross_section()
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
> line 735, in get_flow_through_cross_section
> use_cache=True)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1777, in get_values
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1717, in get_interpolated_values
> use_cache=use_cache, verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
> line 321, in interpolate_block
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 371, in cache
> save_args_to_cache(CD,FN,args,kwargs,compression)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 1082, in save_args_to_cache
> raise IOError(msg)
> IOError: ERROR (caching): Could not open argsfile for writing:
> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_2880_vertices,_960_triangles,_2880_boundary_segments[1280555080918628026]
>
> ----------------------------------------------------------------------
> Ran 1250 tests in 541.061s
>
> FAILED (errors=7)
>
>
> Very hint is deeply appreciate!
>
> with best regards!
> Maikel
>
>
>
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--
+--------------------------------------------------------------------+
| Steve Roberts | My Office: (61)(2) 6125 4445 |
| Department of Mathematics | Math Office: (61)(2) 6125 2908 |
| Mathematical Sciences Institute| Fax: (61)(2) 6125 4984 |
| John Dedman Building #27 | mailto:stephen...@anu.edu.au |
| Australian National University | http://www.maths.anu.edu.au/~steve|
| Canberra ACT 0200 AUSTRALIA | ANU CRICOS # 00120C |
+--------------------------------------------------------------------+
------------------------------
Message: 2
Date: Mon, 18 May 2015 12:08:14 +0800
From: Maikel Issermann <m.iss...@zoho.com>
Subject: Re: [Anuga-user] Error while running runtests.py
To: Stephen Roberts <stephen...@anu.edu.au>,
anuga...@lists.sourceforge.net
Message-ID: <555965AE...@zoho.com>
Content-Type: text/plain; charset=windows-1252; format=flowed
Am 17.05.2015 um 18:31 schrieb Stephen Roberts:
> Hi Maikel,
>
> All the errors seem to have a common cause
>
> line 1082, in save_args_to_cache
> raise IOError(msg)
> IOError: ERROR (caching): Could not open argsfile for writing:
>
> The caching code tries to save to the ~/.python_cache directory by
> default.
>
> Could you check the permissions on the directory ~/.python_cache. It
> should have write permission.
>
> Cheers
> Steve
>
>
>
>
>
>
> On 17/05/2015 5:11 PM, Maikel Issermann wrote:
>> Dear all,
>>
>> I am running several errors while testing my ANUGA installation. I don't
>> understand the errors and thus cannot solve them. I hope somebody has a
>> clue about the error cause and how to fix it.
>>
>> ANUGA is running on linux mint (ubuntu 14.04). I have netcdf-4.3.3.1 ;
>> hdf5-1.8.9 zlib-1.2.8 and netCDF4-1.1.7.1 (python).
>>
>> Here is the error messages:
>>
>> Building, see build.log...
>> Build OK
>> Running unit tests for anuga
>> NumPy version 1.8.2
>> NumPy is installed in /usr/lib/python2.7/dist-packages/numpy
>> Python version 2.7.6 (default, Mar 22 2014, 22:59:56) [GCC 4.8.2]
>> nose version 1.3.1
>> ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................E..................................................................................................................................................................................................................................................................................................................................................................................................................E.......................................E.........!
>>
>> .........
>> ........EE............E..........................E..........................................................................................................................................................................................................
>> ======================================================================
>> ERROR:
>> test_simple_interpolation_example_using_direct_interface_and_caching
>> (test_interpolate.Test_Interpolate)
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/tests/test_interpolate.py",
>>
>> line 270, in
>> test_simple_interpolation_example_using_direct_interface_and_caching
>> verbose=False)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
>>
>> line 141, in interpolate
>> output_centroids=output_centroids)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
>>
>> line 321, in interpolate_block
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 371, in cache
>> save_args_to_cache(CD,FN,args,kwargs,compression)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 1082, in save_args_to_cache
>> raise IOError(msg)
>> IOError: ERROR (caching): Could not open argsfile for writing:
>> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_18_vertices,_6_triangles,_18_boundary_segments[732135140967954368]
>>
>>
>> ======================================================================
>> ERROR: test_get_flow_through_cross_section(self):
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_loadsave.py",
>>
>> line 170, in test_get_flow_through_cross_section_with_geo
>> verbose=False)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/shallow_water_domain.py",
>>
>> line 1546, in get_flow_through_cross_section
>> return cross_section.get_flow_through_cross_section()
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
>>
>> line 735, in get_flow_through_cross_section
>> use_cache=True)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1777, in get_values
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1717, in get_interpolated_values
>> use_cache=use_cache, verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
>>
>> line 321, in interpolate_block
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 371, in cache
>> save_args_to_cache(CD,FN,args,kwargs,compression)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 1082, in save_args_to_cache
>> raise IOError(msg)
>> IOError: ERROR (caching): Could not open argsfile for writing:
>> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_360_vertices,_120_triangles,_360_boundary_segments[9006059791549026239]
>>
>>
>> ======================================================================
>> ERROR: test_cross_section_class(self):
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_shallow_water_domain.py",
>>
>> line 1985, in test_cross_section_class
>> Q = cross_section.get_flow_through_cross_section()
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
>>
>> line 735, in get_flow_through_cross_section
>> use_cache=True)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1777, in get_values
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1717, in get_interpolated_values
>> use_cache=use_cache, verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
>>
>> line 321, in interpolate_block
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 371, in cache
>> save_args_to_cache(CD,FN,args,kwargs,compression)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 1082, in save_args_to_cache
>> raise IOError(msg)
>> IOError: ERROR (caching): Could not open argsfile for writing:
>> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_360_vertices,_120_triangles,_360_boundary_segments[9006059791549026239]
>>
>>
>> ======================================================================
>> ERROR: test_get_energy_through_cross_section(self):
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_shallow_water_domain.py",
>>
>> line 1886, in test_get_energy_through_cross_section_with_geo
>> verbose=False)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/shallow_water_domain.py",
>>
>> line 1580, in get_energy_through_cross_section
>> return cross_section.get_energy_through_cross_section(kind)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
>>
>> line 780, in get_energy_through_cross_section
>> w = stage.get_values(interpolation_points=self.midpoints,
>> use_cache=True)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1777, in get_values
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1717, in get_interpolated_values
>> use_cache=use_cache, verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
>>
>> line 321, in interpolate_block
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 371, in cache
>> save_args_to_cache(CD,FN,args,kwargs,compression)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 1082, in save_args_to_cache
>> raise IOError(msg)
>> IOError: ERROR (caching): Could not open argsfile for writing:
>> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_360_vertices,_120_triangles,_360_boundary_segments[9006059791549026239]
>>
>>
>> ======================================================================
>> ERROR: test_get_flow_through_cross_section(self):
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_shallow_water_domain.py",
>>
>> line 1801, in test_get_flow_through_cross_section_with_geo
>> verbose=False)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/shallow_water_domain.py",
>>
>> line 1546, in get_flow_through_cross_section
>> return cross_section.get_flow_through_cross_section()
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
>>
>> line 735, in get_flow_through_cross_section
>> use_cache=True)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1777, in get_values
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1717, in get_interpolated_values
>> use_cache=use_cache, verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
>>
>> line 321, in interpolate_block
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 371, in cache
>> save_args_to_cache(CD,FN,args,kwargs,compression)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 1082, in save_args_to_cache
>> raise IOError(msg)
>> IOError: ERROR (caching): Could not open argsfile for writing:
>> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_360_vertices,_120_triangles,_360_boundary_segments[9006059791549026239]
>>
>>
>> ======================================================================
>> ERROR: test_inflow_using_flowline
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_shallow_water_domain.py",
>>
>> line 7952, in test_inflow_using_flowline
>> [200.0, 20.0]])
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/shallow_water_domain.py",
>>
>> line 1546, in get_flow_through_cross_section
>> return cross_section.get_flow_through_cross_section()
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
>>
>> line 735, in get_flow_through_cross_section
>> use_cache=True)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1777, in get_values
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1717, in get_interpolated_values
>> use_cache=use_cache, verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
>>
>> line 321, in interpolate_block
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 371, in cache
>> save_args_to_cache(CD,FN,args,kwargs,compression)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 1082, in save_args_to_cache
>> raise IOError(msg)
>> IOError: ERROR (caching): Could not open argsfile for writing:
>> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_2400_vertices,_800_triangles,_2400_boundary_segments[1280555080918628026]
>>
>>
>> ======================================================================
>> ERROR: test_volumetric_balance_computation
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_shallow_water_domain.py",
>>
>> line 7410, in test_volumetric_balance_computation
>> [200.0, 20.0]])
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/shallow_water_domain.py",
>>
>> line 1546, in get_flow_through_cross_section
>> return cross_section.get_flow_through_cross_section()
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
>>
>> line 735, in get_flow_through_cross_section
>> use_cache=True)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1777, in get_values
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1717, in get_interpolated_values
>> use_cache=use_cache, verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
>>
>> line 321, in interpolate_block
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 371, in cache
>> save_args_to_cache(CD,FN,args,kwargs,compression)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 1082, in save_args_to_cache
>> raise IOError(msg)
>> IOError: ERROR (caching): Could not open argsfile for writing:
>> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_2880_vertices,_960_triangles,_2880_boundary_segments[1280555080918628026]
>>
>>
>> ----------------------------------------------------------------------
>> Ran 1250 tests in 541.061s
>>
>> FAILED (errors=7)
>>
>>
>> Very hint is deeply appreciate!
>>
>> with best regards!
>> Maikel
>>
>>
>>
>> ------------------------------------------------------------------------------
>>
>> One dashboard for servers and applications across Physical-Virtual-Cloud
>> Widest out-of-the-box monitoring support with 50+ applications
>> Performance metrics, stats and reports that give you Actionable Insights
>> Deep dive visibility with transaction tracing using APM Insight.
>> http://ad.doubleclick.net/ddm/clk/290420510;117567292;y
>> _______________________________________________
>> Anuga-user mailing list
>> Anuga...@lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/anuga-user
>
>
Hi Steve,
yeah, I got full permission on this folder:
$ ls -l -a
drwxrwxrwx 2 scrox scrox 40960 Mai 17 16:41 .python_cache
I was actually wondering if the argsfile exist at all. but I dunno how
to check it.
cheers!
maikel
------------------------------
------------------------------------------------------------------------------
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Widest out-of-the-box monitoring support with 50+ applications
Performance metrics, stats and reports that give you Actionable Insights
Deep dive visibility with transaction tracing using APM Insight.
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Today's Topics:
1. Re: Error while running runtests.py (Stephen Roberts)
2. Re: Error while running runtests.py (Maikel Issermann)
----------------------------------------------------------------------
Message: 1
Date: Sun, 17 May 2015 20:31:52 +1000
From: Stephen Roberts <stephen...@anu.edu.au>
Subject: Re: [Anuga-user] Error while running runtests.py
To: Maikel Issermann <m.iss...@zoho.com>,
anuga...@lists.sourceforge.net
Message-ID: <55586E18...@anu.edu.au>
Content-Type: text/plain; charset=windows-1252; format=flowed
Hi Maikel,
All the errors seem to have a common cause
line 1082, in save_args_to_cache
raise IOError(msg)
IOError: ERROR (caching): Could not open argsfile for writing:
The caching code tries to save to the ~/.python_cache directory by
default.
Could you check the permissions on the directory ~/.python_cache. It
should have write permission.
Cheers
Steve
On 17/05/2015 5:11 PM, Maikel Issermann wrote:
> Dear all,
>
> I am running several errors while testing my ANUGA installation. I don't
> understand the errors and thus cannot solve them. I hope somebody has a
> clue about the error cause and how to fix it.
>
> ANUGA is running on linux mint (ubuntu 14.04). I have netcdf-4.3.3.1 ;
> hdf5-1.8.9 zlib-1.2.8 and netCDF4-1.1.7.1 (python).
>
> Here is the error messages:
>
> Building, see build.log...
> Build OK
> Running unit tests for anuga
> NumPy version 1.8.2
> NumPy is installed in /usr/lib/python2.7/dist-packages/numpy
> Python version 2.7.6 (default, Mar 22 2014, 22:59:56) [GCC 4.8.2]
> nose version 1.3.1
> ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................E..................................................................................................................................................................................................................................................................................................................................................................................................................E.......................................E.........!
> .........
> ........EE............E..........................E..........................................................................................................................................................................................................
> ======================================================================
> ERROR:
> test_simple_interpolation_example_using_direct_interface_and_caching
> (test_interpolate.Test_Interpolate)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/tests/test_interpolate.py",
> line 270, in
> test_simple_interpolation_example_using_direct_interface_and_caching
> verbose=False)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
> line 141, in interpolate
> output_centroids=output_centroids)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
> line 321, in interpolate_block
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 371, in cache
> save_args_to_cache(CD,FN,args,kwargs,compression)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 1082, in save_args_to_cache
> raise IOError(msg)
> IOError: ERROR (caching): Could not open argsfile for writing:
> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_18_vertices,_6_triangles,_18_boundary_segments[732135140967954368]
>
> ======================================================================
> ERROR: test_get_flow_through_cross_section(self):
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_loadsave.py",
> line 170, in test_get_flow_through_cross_section_with_geo
> verbose=False)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/shallow_water_domain.py",
> line 1546, in get_flow_through_cross_section
> return cross_section.get_flow_through_cross_section()
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
> line 735, in get_flow_through_cross_section
> use_cache=True)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1777, in get_values
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1717, in get_interpolated_values
> use_cache=use_cache, verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
> line 321, in interpolate_block
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 371, in cache
> save_args_to_cache(CD,FN,args,kwargs,compression)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 1082, in save_args_to_cache
> raise IOError(msg)
> IOError: ERROR (caching): Could not open argsfile for writing:
> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_360_vertices,_120_triangles,_360_boundary_segments[9006059791549026239]
>
> ======================================================================
> ERROR: test_cross_section_class(self):
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_shallow_water_domain.py",
> line 1985, in test_cross_section_class
> Q = cross_section.get_flow_through_cross_section()
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
> line 735, in get_flow_through_cross_section
> use_cache=True)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1777, in get_values
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1717, in get_interpolated_values
> use_cache=use_cache, verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
> line 321, in interpolate_block
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 371, in cache
> save_args_to_cache(CD,FN,args,kwargs,compression)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 1082, in save_args_to_cache
> raise IOError(msg)
> IOError: ERROR (caching): Could not open argsfile for writing:
> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_360_vertices,_120_triangles,_360_boundary_segments[9006059791549026239]
>
> ======================================================================
> ERROR: test_get_energy_through_cross_section(self):
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_shallow_water_domain.py",
> line 1886, in test_get_energy_through_cross_section_with_geo
> verbose=False)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/shallow_water_domain.py",
> line 1580, in get_energy_through_cross_section
> return cross_section.get_energy_through_cross_section(kind)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
> line 780, in get_energy_through_cross_section
> w = stage.get_values(interpolation_points=self.midpoints,
> use_cache=True)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1777, in get_values
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1717, in get_interpolated_values
> use_cache=use_cache, verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
> line 321, in interpolate_block
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 371, in cache
> save_args_to_cache(CD,FN,args,kwargs,compression)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 1082, in save_args_to_cache
> raise IOError(msg)
> IOError: ERROR (caching): Could not open argsfile for writing:
> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_360_vertices,_120_triangles,_360_boundary_segments[9006059791549026239]
>
> ======================================================================
> ERROR: test_get_flow_through_cross_section(self):
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_shallow_water_domain.py",
> line 1801, in test_get_flow_through_cross_section_with_geo
> verbose=False)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/shallow_water_domain.py",
> line 1546, in get_flow_through_cross_section
> return cross_section.get_flow_through_cross_section()
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
> line 735, in get_flow_through_cross_section
> use_cache=True)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1777, in get_values
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1717, in get_interpolated_values
> use_cache=use_cache, verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
> line 321, in interpolate_block
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 371, in cache
> save_args_to_cache(CD,FN,args,kwargs,compression)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 1082, in save_args_to_cache
> raise IOError(msg)
> IOError: ERROR (caching): Could not open argsfile for writing:
> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_360_vertices,_120_triangles,_360_boundary_segments[9006059791549026239]
>
> ======================================================================
> ERROR: test_inflow_using_flowline
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_shallow_water_domain.py",
> line 7952, in test_inflow_using_flowline
> [200.0, 20.0]])
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/shallow_water_domain.py",
> line 1546, in get_flow_through_cross_section
> return cross_section.get_flow_through_cross_section()
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
> line 735, in get_flow_through_cross_section
> use_cache=True)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1777, in get_values
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1717, in get_interpolated_values
> use_cache=use_cache, verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
> line 321, in interpolate_block
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 371, in cache
> save_args_to_cache(CD,FN,args,kwargs,compression)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 1082, in save_args_to_cache
> raise IOError(msg)
> IOError: ERROR (caching): Could not open argsfile for writing:
> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_2400_vertices,_800_triangles,_2400_boundary_segments[1280555080918628026]
>
> ======================================================================
> ERROR: test_volumetric_balance_computation
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_shallow_water_domain.py",
> line 7410, in test_volumetric_balance_computation
> [200.0, 20.0]])
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/shallow_water_domain.py",
> line 1546, in get_flow_through_cross_section
> return cross_section.get_flow_through_cross_section()
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
> line 735, in get_flow_through_cross_section
> use_cache=True)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1777, in get_values
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
> line 1717, in get_interpolated_values
> use_cache=use_cache, verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
> line 321, in interpolate_block
> verbose=verbose)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 371, in cache
> save_args_to_cache(CD,FN,args,kwargs,compression)
> File
> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
> line 1082, in save_args_to_cache
> raise IOError(msg)
> IOError: ERROR (caching): Could not open argsfile for writing:
> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_2880_vertices,_960_triangles,_2880_boundary_segments[1280555080918628026]
>
> ----------------------------------------------------------------------
> Ran 1250 tests in 541.061s
>
> FAILED (errors=7)
>
>
> Very hint is deeply appreciate!
>
> with best regards!
> Maikel
>
>
>
> ------------------------------------------------------------------------------
> One dashboard for servers and applications across Physical-Virtual-Cloud
> Widest out-of-the-box monitoring support with 50+ applications
> Performance metrics, stats and reports that give you Actionable Insights
> Deep dive visibility with transaction tracing using APM Insight.
> http://ad.doubleclick.net/ddm/clk/290420510;117567292;y
> _______________________________________________
> Anuga-user mailing list
> Anuga...@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/anuga-user
--
+--------------------------------------------------------------------+
| Steve Roberts | My Office: (61)(2) 6125 4445 |
| Department of Mathematics | Math Office: (61)(2) 6125 2908 |
| Mathematical Sciences Institute| Fax: (61)(2) 6125 4984 |
| John Dedman Building #27 | mailto:stephen...@anu.edu.au |
| Australian National University | http://www.maths.anu.edu.au/~steve|
| Canberra ACT 0200 AUSTRALIA | ANU CRICOS # 00120C |
+--------------------------------------------------------------------+
------------------------------
Message: 2
Date: Mon, 18 May 2015 12:08:14 +0800
From: Maikel Issermann <m.iss...@zoho.com>
Subject: Re: [Anuga-user] Error while running runtests.py
To: Stephen Roberts <stephen...@anu.edu.au>,
anuga...@lists.sourceforge.net
Message-ID: <555965AE...@zoho.com>
Content-Type: text/plain; charset=windows-1252; format=flowed
Am 17.05.2015 um 18:31 schrieb Stephen Roberts:
> Hi Maikel,
>
> All the errors seem to have a common cause
>
> line 1082, in save_args_to_cache
> raise IOError(msg)
> IOError: ERROR (caching): Could not open argsfile for writing:
>
> The caching code tries to save to the ~/.python_cache directory by
> default.
>
> Could you check the permissions on the directory ~/.python_cache. It
> should have write permission.
>
> Cheers
> Steve
>
>
>
>
>
>
> On 17/05/2015 5:11 PM, Maikel Issermann wrote:
>> Dear all,
>>
>> I am running several errors while testing my ANUGA installation. I don't
>> understand the errors and thus cannot solve them. I hope somebody has a
>> clue about the error cause and how to fix it.
>>
>> ANUGA is running on linux mint (ubuntu 14.04). I have netcdf-4.3.3.1 ;
>> hdf5-1.8.9 zlib-1.2.8 and netCDF4-1.1.7.1 (python).
>>
>> Here is the error messages:
>>
>> Building, see build.log...
>> Build OK
>> Running unit tests for anuga
>> NumPy version 1.8.2
>> NumPy is installed in /usr/lib/python2.7/dist-packages/numpy
>> Python version 2.7.6 (default, Mar 22 2014, 22:59:56) [GCC 4.8.2]
>> nose version 1.3.1
>> ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................E..................................................................................................................................................................................................................................................................................................................................................................................................................E.......................................E.........!
>>
>> .........
>> ........EE............E..........................E..........................................................................................................................................................................................................
>> ======================================================================
>> ERROR:
>> test_simple_interpolation_example_using_direct_interface_and_caching
>> (test_interpolate.Test_Interpolate)
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/tests/test_interpolate.py",
>>
>> line 270, in
>> test_simple_interpolation_example_using_direct_interface_and_caching
>> verbose=False)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
>>
>> line 141, in interpolate
>> output_centroids=output_centroids)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
>>
>> line 321, in interpolate_block
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 371, in cache
>> save_args_to_cache(CD,FN,args,kwargs,compression)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 1082, in save_args_to_cache
>> raise IOError(msg)
>> IOError: ERROR (caching): Could not open argsfile for writing:
>> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_18_vertices,_6_triangles,_18_boundary_segments[732135140967954368]
>>
>>
>> ======================================================================
>> ERROR: test_get_flow_through_cross_section(self):
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_loadsave.py",
>>
>> line 170, in test_get_flow_through_cross_section_with_geo
>> verbose=False)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/shallow_water_domain.py",
>>
>> line 1546, in get_flow_through_cross_section
>> return cross_section.get_flow_through_cross_section()
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
>>
>> line 735, in get_flow_through_cross_section
>> use_cache=True)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1777, in get_values
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1717, in get_interpolated_values
>> use_cache=use_cache, verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
>>
>> line 321, in interpolate_block
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 371, in cache
>> save_args_to_cache(CD,FN,args,kwargs,compression)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 1082, in save_args_to_cache
>> raise IOError(msg)
>> IOError: ERROR (caching): Could not open argsfile for writing:
>> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_360_vertices,_120_triangles,_360_boundary_segments[9006059791549026239]
>>
>>
>> ======================================================================
>> ERROR: test_cross_section_class(self):
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_shallow_water_domain.py",
>>
>> line 1985, in test_cross_section_class
>> Q = cross_section.get_flow_through_cross_section()
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
>>
>> line 735, in get_flow_through_cross_section
>> use_cache=True)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1777, in get_values
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1717, in get_interpolated_values
>> use_cache=use_cache, verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
>>
>> line 321, in interpolate_block
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 371, in cache
>> save_args_to_cache(CD,FN,args,kwargs,compression)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 1082, in save_args_to_cache
>> raise IOError(msg)
>> IOError: ERROR (caching): Could not open argsfile for writing:
>> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_360_vertices,_120_triangles,_360_boundary_segments[9006059791549026239]
>>
>>
>> ======================================================================
>> ERROR: test_get_energy_through_cross_section(self):
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_shallow_water_domain.py",
>>
>> line 1886, in test_get_energy_through_cross_section_with_geo
>> verbose=False)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/shallow_water_domain.py",
>>
>> line 1580, in get_energy_through_cross_section
>> return cross_section.get_energy_through_cross_section(kind)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
>>
>> line 780, in get_energy_through_cross_section
>> w = stage.get_values(interpolation_points=self.midpoints,
>> use_cache=True)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1777, in get_values
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1717, in get_interpolated_values
>> use_cache=use_cache, verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
>>
>> line 321, in interpolate_block
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 371, in cache
>> save_args_to_cache(CD,FN,args,kwargs,compression)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 1082, in save_args_to_cache
>> raise IOError(msg)
>> IOError: ERROR (caching): Could not open argsfile for writing:
>> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_360_vertices,_120_triangles,_360_boundary_segments[9006059791549026239]
>>
>>
>> ======================================================================
>> ERROR: test_get_flow_through_cross_section(self):
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_shallow_water_domain.py",
>>
>> line 1801, in test_get_flow_through_cross_section_with_geo
>> verbose=False)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/shallow_water_domain.py",
>>
>> line 1546, in get_flow_through_cross_section
>> return cross_section.get_flow_through_cross_section()
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
>>
>> line 735, in get_flow_through_cross_section
>> use_cache=True)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1777, in get_values
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1717, in get_interpolated_values
>> use_cache=use_cache, verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
>>
>> line 321, in interpolate_block
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 371, in cache
>> save_args_to_cache(CD,FN,args,kwargs,compression)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 1082, in save_args_to_cache
>> raise IOError(msg)
>> IOError: ERROR (caching): Could not open argsfile for writing:
>> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_360_vertices,_120_triangles,_360_boundary_segments[9006059791549026239]
>>
>>
>> ======================================================================
>> ERROR: test_inflow_using_flowline
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_shallow_water_domain.py",
>>
>> line 7952, in test_inflow_using_flowline
>> [200.0, 20.0]])
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/shallow_water_domain.py",
>>
>> line 1546, in get_flow_through_cross_section
>> return cross_section.get_flow_through_cross_section()
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
>>
>> line 735, in get_flow_through_cross_section
>> use_cache=True)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1777, in get_values
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1717, in get_interpolated_values
>> use_cache=use_cache, verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
>>
>> line 321, in interpolate_block
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 371, in cache
>> save_args_to_cache(CD,FN,args,kwargs,compression)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 1082, in save_args_to_cache
>> raise IOError(msg)
>> IOError: ERROR (caching): Could not open argsfile for writing:
>> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_2400_vertices,_800_triangles,_2400_boundary_segments[1280555080918628026]
>>
>>
>> ======================================================================
>> ERROR: test_volumetric_balance_computation
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/tests/test_shallow_water_domain.py",
>>
>> line 7410, in test_volumetric_balance_computation
>> [200.0, 20.0]])
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/shallow_water_domain.py",
>>
>> line 1546, in get_flow_through_cross_section
>> return cross_section.get_flow_through_cross_section()
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/shallow_water/forcing.py",
>>
>> line 735, in get_flow_through_cross_section
>> use_cache=True)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1777, in get_values
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/abstract_2d_finite_volumes/quantity.py",
>>
>> line 1717, in get_interpolated_values
>> use_cache=use_cache, verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/fit_interpolate/interpolate.py",
>>
>> line 321, in interpolate_block
>> verbose=verbose)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 371, in cache
>> save_args_to_cache(CD,FN,args,kwargs,compression)
>> File
>> "/home/scrox/anuga_core/build/testenv/lib/python2.7/site-packages/anuga/caching/caching.py",
>>
>> line 1082, in save_args_to_cache
>> raise IOError(msg)
>> IOError: ERROR (caching): Could not open argsfile for writing:
>> bound_method_Interpolate._build_interpolation_matrix_A_of_Interpolation_object_based_on:_Mesh:_2880_vertices,_960_triangles,_2880_boundary_segments[1280555080918628026]
>>
>>
>> ----------------------------------------------------------------------
>> Ran 1250 tests in 541.061s
>>
>> FAILED (errors=7)
>>
>>
>> Very hint is deeply appreciate!
>>
>> with best regards!
>> Maikel
>>
>>
>>
>> ------------------------------------------------------------------------------
>>
>> One dashboard for servers and applications across Physical-Virtual-Cloud
>> Widest out-of-the-box monitoring support with 50+ applications
>> Performance metrics, stats and reports that give you Actionable Insights
>> Deep dive visibility with transaction tracing using APM Insight.
>> http://ad.doubleclick.net/ddm/clk/290420510;117567292;y
>> _______________________________________________
>> Anuga-user mailing list
>> Anuga...@lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/anuga-user
>
>
Hi Steve,
yeah, I got full permission on this folder:
$ ls -l -a
drwxrwxrwx 2 scrox scrox 40960 Mai 17 16:41 .python_cache
I was actually wondering if the argsfile exist at all. but I dunno how
to check it.
cheers!
maikel
------------------------------
------------------------------------------------------------------------------
One dashboard for servers and applications across Physical-Virtual-Cloud
Widest out-of-the-box monitoring support with 50+ applications
Performance metrics, stats and reports that give you Actionable Insights
Deep dive visibility with transaction tracing using APM Insight.
http://ad.doubleclick.net/ddm/clk/290420510;117567292;y
------------------------------
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