linux arm64 builds aren't officially supported.
non-clang builds aren't officially supported either.
One thing you could try is to add
target_cpu = ['arm64']
in your .gclient file and then run 'gclient sync'.
Not sure how much it would help, though.
The failure you see is in 'third_party/catapult', which is used only in tests, so the failure can be avoided by not building it.
If all you want to build is libEGL.so, libGLESv2.so, then you should run `autoninja -C out/Debug angle'.
Or "out/Release", since you set "is_debug = false"?