java.lang.NoClassDefFoundError: fi/helsinki/ltdk/csbl/asser/pipeline/SearchReplaceComponent

[Ville Rantanen]

This is a question posted by e-mail:

Hey,

I tried your trick with SearchReplace, but it seems to have some sort  

of error. What does this mean?

Executing query1 (SearchReplace)

[STDERR query1] Exception in thread "main"  

java.lang.NoClassDefFoundError:  

fi/helsinki/ltdk/csbl/asser/pipeline/SearchReplaceComponent

[STDERR query1] Caused by: java.lang.ClassNotFoundException:  

fi.helsinki.ltdk.csbl.asser.pipeline.SearchReplaceComponent

[STDERR query1]         at  

java.net.URLClassLoader$1.run(URLClassLoader.java:217)

[STDERR query1]         at  

java.security.AccessController.doPrivileged(Native Method)

[STDERR query1]         at  

java.net.URLClassLoader.findClass(URLClassLoader.java:205)

[STDERR query1]         at  

java.lang.ClassLoader.loadClass(ClassLoader.java:321)

[STDERR query1]         at  

sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:294)

[STDERR query1]         at  

java.lang.ClassLoader.loadClass(ClassLoader.java:266)

[STDERR query1] Could not find the main class:  

fi.helsinki.ltdk.csbl.asser.pipeline.SearchReplaceComponent. Program  

will exit.

[ERROR] Component query1: Component returned error status: 1 (Generic error)

Component query1 finished with failure; READY queue is empty.

Log closed on 2013-07-03 08:19:14; user esaarent

 

[Ville Rantanen]

you are missing the microarray.jar in the microarray bundle  lib/java

build it by going to the microarray bundle home folder, and type

ant microarray.jar