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to Andromeda Help
Hi,
When I use MaxQuant for the LFQ analysis. I found some proteins from my experimental sample have high intensities and several peptides. Their intensities are 0 in the control sample. I am very interested in those proteins. But their LFQ intensities are 0 in both samples. I can not use imputation for the ratio calculation. I have used the "stabilize large LFQ ratio". Could someone help me understand it?