TIMS TOF Pro MQ Search Crushing

[Florian Wolfgang Otto]

Hello,

I got my TIMS ToF Data and when I run the search after the "Feature Detection Tims" I get this error message:

Unhandled Exception: System.Exception: Exception during execution of external process: 3283344 Unhandled exception. System.Collections.Generic.KeyNotFoundException: The given key '1' was not present in the dictionary.

   at System.Collections.Generic.Dictionary`2.get_Item(TKey key)

   at PluginRawBrukerTdf.BrukerTdfRawFile.GetSpectrum(Int32 scanNumberMin, Int32 scanNumberMax, Int32 imsIndexMin, Int32 imsIndexMax, Boolean readCentroids, Double[]& masses, Single[]& intensities, Double resolution, Double gridSpacing, Double mzMin, Double mzMax, Boolean isMs1)

   at BaseLibS.Ms.RawFileLayer.GetMs1SpectrumArray(Int32 indexMin, Int32 indexMax, Int32 imsIndexMin, Int32 imsIndexMax, Boolean readCentroids, Double[]& masses, Single[]& intensities, Double resolution, Double gridSpacing, Double mzMin, Double mzMax)

   at BaseLibS.Ms.RawFileLayer.GetMs1Spectrum(Int32 indexMin, Int32 indexMax, Int32 imsIndexMin, Int32 imsIndexMax, Boolean readCentroids, Double resolution, Double gridSpacing, Double mzMin, Double mzMax)

   at MsLib.Raw.RawLayerMs1TimsWindowSummedFrames.GetSpectrum(Int32 j, Boolean readCentroids)

   at MaxQuantLibS.Data.PeakDetection.Detect(BasicGroupParams param, RawLayer rawFile, String peaksPath, Boolean skipBeginning, Boolean writeTmpFiles, Boolean hasMassBounds, Boolean isDia, Boolean isMsms)

   at MaxQuantLibS.Domains.Peptides.Features.FeatureDetectionTimsUtil.DetectFeaturesImpl(MaxQuantParams mqpar, Int32 taskIndex)

   at MaxQuantLibS.Domains.Peptides.Features.FeatureDetectionTimsUtil.DetectFeatures(String mqparFile, Int32 taskIndex)

   at MaxQuantLibS.Domains.Peptides.Work.FeatureDetectionTims.Calculation(String[] args, Responder responder)

   at MaxQuantLibS.Domains.Peptides.Work.MaxQuantWorkDispatcherUtil.PerformTask(Int32 taskType, String[] args, Responder responder)

   at MaxQuantLibS.Base.MaxQuantUtils.Run(Int32 softwareId, Int32 taskType, String[] args, Responder responder)

   at MaxQuantTaskCore.Program.Function(String[] args, Responder responder)

   at Utils.Util.ExternalProcess.Run(String[] args, Boolean debug)

   at MaxQuantTaskCore.Program.Main(String[] args)

 

   at QueueingSystem.WorkDispatcher.ProcessSingleRunExternalProcess(Int32 taskIndex, Int32 threadIndex)

   at QueueingSystem.WorkDispatcher.DoWork(Int32 taskIndex, Int32 threadIndex)

   at QueueingSystem.WorkDispatcher.Work(Object threadIndex)

   at System.Threading.Thread.ThreadMain_ParameterizedThreadStart(Object parameter)

   at System.Threading.ExecutionContext.RunInternal(ExecutionContext executionContext, ContextCallback callback, Object state)

--- End of stack trace from previous location where exception was thrown ---

   at System.Runtime.ExceptionServices.ExceptionDispatchInfo.Throw()

Aborted (core dumped)

Any suggestions to solve this problem?

Thx in advance