MaxQuant crashing

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Ameesha Paliwal

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Jan 17, 2023, 5:57:25 PM1/17/23
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Hi everyone, 

I'm pretty new to using MaxQuant and I'm having some trouble with a large dataset. I have ~150 raw files each around 4 gb. I'm doing IBAQ and LFQ and using version 2.2. I tried running all the files at once using 10 threads, but the computer crashed after a few days. I tried again using just a few files to try and troubleshoot the problem, but even with 5 files the computer crashed after 24 hours. Does anyone have any experience running large datasets? 

Thanks for your help in advance!
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