Andromeda Help

We are very excited to announce that the 14th MaxQuant Summer School 2023 #MQSS2023 is going to be in

Hello, I run data and this time it worked but there is no display of the results. Any suggestions?

Dear all, I've been searching a recent description of how the Andromeda score is made, and mostly

Hi everyone, I'm pretty new to using MaxQuant and I'm having some trouble with a large

Hello, Does Maxquant support manual decoy or non decoy database search option? And my input file is

Hola buenos dias queria preguntar si alguien sabe como descargar la version 1.5.5.3 de perseo ya que

Hi Katie, Did you or anyone else has figure out how to do this? Best regards, Ani "The Answer

Installed a pc from scratch and tried to run a LFQ analysis in MaxQuant 1.6.8. It crashed with a .

You can try this link https://datashare.biochem.mpg.de/s/qe1IqcKbz2j2Ruf On Wednesday, 13 November

Hi, When I use MaxQuant for the LFQ analysis. I found some proteins from my experimental sample have

I tried to analyzed my files, it started but i got crashed every time can anybody tell what should be

Hello, I have never used a previous version but my data from TOF 6600 is getting a really low

Hi, I found that deleting and re-downloading Maxquant after installing .NET worked. If I use the

Hey everyone, does anyone know if andromeda's stand-alone version is still supported? and if yes,

Hi everyone, I'm new at working with MS data and I hope maybe someone more experienced could help

Hi I do not know which fractions were adjacent when using MBR, what can I do? Thanks

Hi For MBR, "Matching is performed between the same and adjacent fractions if fraction numbers

Hi, I tried MQ 2.0.1.0 for LFQ analysis and I noticed that there are different parameters to define

Hi everyone, I am comparing results that I get from doing a Tukey's test in Perseus for

Hi MQ people, I'm doing a quick comparison for human LFQ data I get from .raw files (QExactive)

Hi, I have downloaded Maxquant 2.0.1.0, but there is no settings for crosslinking. I think it should

Hi, maybe someone can explain the normalization step "subtract" in persues In the

I am having the same issue, but it is only with certain files. Did you find any solution to the

Hi everyone, I have a problem with the identification of highly similar proteins in MaxQuant. for

I'm hoping to set up a computer for MaxQuant database searching. Any advice on which computers or

Thank you! That worked On Friday, 5 March 2021 at 11:57:23 UTC fernando...@gmail.com wrote: Hi

I am also facing the same problem except I was running a simple LFQ run and am not able to get the

Hi all, I am using MQ 1.6.17 to process SCIEX.wiff files. However, it stops at the feature detection

Hi! Trying to open a session from collaborator. Is there a way to solve the version mismatch issue?

Hi I am quite new to Perseus, I have only 2 group with 24 samples as control and 7 treated samples. I