Andromeda Help

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Oct 17

como descargar la version 1.5.5.3 de perseus,?

Hola buenos dias queria preguntar si alguien sabe como descargar la version 1.5.5.3 de perseo ya que

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como descargar la version 1.5.5.3 de perseus,?

Hola buenos dias queria preguntar si alguien sabe como descargar la version 1.5.5.3 de perseo ya que

Oct 17

Katie Schaefer, Animesh Sharma2

Sep 5

Maxquant silac analysis for TIMS-TOF data

Hi Katie, Did you or anyone else has figure out how to do this? Best regards, Ani "The Answer

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Maxquant silac analysis for TIMS-TOF data

Hi Katie, Did you or anyone else has figure out how to do this? Best regards, Ani "The Answer

Sep 5

Manuel Fernandez

May 12

MaxQuant Task .Net Runtime Error

Installed a pc from scratch and tried to run a LFQ analysis in MaxQuant 1.6.8. It crashed with a .

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MaxQuant Task .Net Runtime Error

Installed a pc from scratch and tried to run a LFQ analysis in MaxQuant 1.6.8. It crashed with a .

May 12

chenna...@gmail.com, … mayank gupta7

Jan 3

Perseus annotation download

You can try this link https://datashare.biochem.mpg.de/s/qe1IqcKbz2j2Ruf On Wednesday, 13 November

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Perseus annotation download

You can try this link https://datashare.biochem.mpg.de/s/qe1IqcKbz2j2Ruf On Wednesday, 13 November

Jan 3

chenna...@gmail.com

12/1/21

MaxQuant label-free quantification

Hi, When I use MaxQuant for the LFQ analysis. I found some proteins from my experimental sample have

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MaxQuant label-free quantification

Hi, When I use MaxQuant for the LFQ analysis. I found some proteins from my experimental sample have

12/1/21

11/26/21

MaxQuant Version 2.0.3.0

I tried to analyzed my files, it started but i got crashed every time can anybody tell what should be

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MaxQuant Version 2.0.3.0

I tried to analyzed my files, it started but i got crashed every time can anybody tell what should be

11/26/21

Low Teck Yew, Inês Caramelo2

11/11/21

Protein ID in new version of MaxQaunt

Hello, I have never used a previous version but my data from TOF 6600 is getting a really low

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Protein ID in new version of MaxQaunt

Hello, I have never used a previous version but my data from TOF 6600 is getting a really low

11/11/21

Sunwoo Lab, … Siena Barton3

11/5/21

Maxquant dotnet problem

Hi, I found that deleting and re-downloading Maxquant after installing .NET worked. If I use the

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Maxquant dotnet problem

Hi, I found that deleting and re-downloading Maxquant after installing .NET worked. If I use the

11/5/21

Ekaterina Vansovich

10/26/21

Andromeda stand alone version

Hey everyone, does anyone know if andromeda's stand-alone version is still supported? and if yes,

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Andromeda stand alone version

Hey everyone, does anyone know if andromeda's stand-alone version is still supported? and if yes,

10/26/21

Ekaterina Vansovich

10/5/21

isobarQuant with the Maxquant search engine

Hi everyone, I'm new at working with MS data and I hope maybe someone more experienced could help

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isobarQuant with the Maxquant search engine

Hi everyone, I'm new at working with MS data and I hope maybe someone more experienced could help

10/5/21

9/28/21

adjacent fraction for MBR

Hi I do not know which fractions were adjacent when using MBR, what can I do? Thanks

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adjacent fraction for MBR

Hi I do not know which fractions were adjacent when using MBR, what can I do? Thanks

9/28/21

9/28/21

adjacent fraction for Match between runs

Hi For MBR, "Matching is performed between the same and adjacent fractions if fraction numbers

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adjacent fraction for Match between runs

Hi For MBR, "Matching is performed between the same and adjacent fractions if fraction numbers

9/28/21

8/23/21

LFQ MQ 2.0.1.0 vs LFQ MQ 1.6.5

Hi, I tried MQ 2.0.1.0 for LFQ analysis and I noticed that there are different parameters to define

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LFQ MQ 2.0.1.0 vs LFQ MQ 1.6.5

Hi, I tried MQ 2.0.1.0 for LFQ analysis and I noticed that there are different parameters to define

8/23/21

Manuel Ivan Villalobos Solis

8/12/21

Values in Post-hoc Tukey's results

Hi everyone, I am comparing results that I get from doing a Tukey's test in Perseus for

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Values in Post-hoc Tukey's results

Hi everyone, I am comparing results that I get from doing a Tukey's test in Perseus for

8/12/21

Alejandro Cohen

7/9/21

Peptide Missing?

Hi MQ people, I'm doing a quick comparison for human LFQ data I get from .raw files (QExactive)

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Peptide Missing?

Hi MQ people, I'm doing a quick comparison for human LFQ data I get from .raw files (QExactive)

7/9/21

6/28/21

where are the settings for crosslinking?

Hi, I have downloaded Maxquant 2.0.1.0, but there is no settings for crosslinking. I think it should

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where are the settings for crosslinking?

Hi, I have downloaded Maxquant 2.0.1.0, but there is no settings for crosslinking. I think it should

6/28/21

Kasandra Pedersen

6/27/21

Normalization in Perseus

Hi, maybe someone can explain the normalization step "subtract" in persues In the

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Normalization in Perseus

Hi, maybe someone can explain the normalization step "subtract" in persues In the

6/27/21

Jared Churko, Nathaniel Jorgenson2

6/23/21

MaxQuant crashing Thread?

I am having the same issue, but it is only with certain files. Did you find any solution to the

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MaxQuant crashing Thread?

I am having the same issue, but it is only with certain files. Did you find any solution to the

6/23/21

4/28/21

identifying proteins that are very similar in the sequence.

Hi everyone, I have a problem with the identification of highly similar proteins in MaxQuant. for

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identifying proteins that are very similar in the sequence.

Hi everyone, I have a problem with the identification of highly similar proteins in MaxQuant. for

4/28/21

4/22/21

advice on computer specs

I'm hoping to set up a computer for MaxQuant database searching. Any advice on which computers or

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advice on computer specs

I'm hoping to set up a computer for MaxQuant database searching. Any advice on which computers or

4/22/21

Kedric Milholland, … Rachael Barry8

3/5/21

MaxQuant 1.6.15.0 gives error after hitting start.

Thank you! That worked On Friday, 5 March 2021 at 11:57:23 UTC fernando...@gmail.com wrote: Hi

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MaxQuant 1.6.15.0 gives error after hitting start.

Thank you! That worked On Friday, 5 March 2021 at 11:57:23 UTC fernando...@gmail.com wrote: Hi

3/5/21

Kenton Chao, Mohammed Ghalib2

1/26/21

how to track the error message?

I am also facing the same problem except I was running a simple LFQ run and am not able to get the

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how to track the error message?

I am also facing the same problem except I was running a simple LFQ run and am not able to get the

1/26/21

Madhumeeta Chadha

1/25/21

New MQ user facing error in feature detection

Hi all, I am using MQ 1.6.17 to process SCIEX.wiff files. However, it stops at the feature detection

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New MQ user facing error in feature detection

Hi all, I am using MQ 1.6.17 to process SCIEX.wiff files. However, it stops at the feature detection

1/25/21

Mariana Schuster

1/19/21

Perseus error: Failed to read session potentially due to version mismatch

Hi! Trying to open a session from collaborator. Is there a way to solve the version mismatch issue?

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Perseus error: Failed to read session potentially due to version mismatch

Hi! Trying to open a session from collaborator. Is there a way to solve the version mismatch issue?

1/19/21

11/21/20

Perseus grouping

Hi I am quite new to Perseus, I have only 2 group with 24 samples as control and 7 treated samples. I

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Perseus grouping

Hi I am quite new to Perseus, I have only 2 group with 24 samples as control and 7 treated samples. I

11/21/20

9/14/20

Index was outside the bounds of the array.

I'm trying for a while to run an breast cancer analysis generated from a Triple TOF 5600. but I

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Index was outside the bounds of the array.

I'm trying for a while to run an breast cancer analysis generated from a Triple TOF 5600. but I

9/14/20

7/22/20

Maxquant on linux wont write txt folder

Hi I am trying to run maxquant on HPC so I am generating my mqpar file from my personal computer, it

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Maxquant on linux wont write txt folder

Hi I am trying to run maxquant on HPC so I am generating my mqpar file from my personal computer, it

7/22/20

rim.z...@phystech.edu, … ling zhong3

7/15/20

Could Stand-alone Andromeda use mzXML or mgf??!!

The APL to MGF converter has stopped working. Do you know any current working converter? Thank you,

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Could Stand-alone Andromeda use mzXML or mgf??!!

The APL to MGF converter has stopped working. Do you know any current working converter? Thank you,

7/15/20

Sílvia Batista, … Michael Regan8

7/8/20

Perseus annotation help

Hi everyone, I'm very new to Perseus and require the addition of annotations to move to the next

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Perseus annotation help

Hi everyone, I'm very new to Perseus and require the addition of annotations to move to the next

7/8/20

abak...@gmail.com, … Katelyn Ludwig11

6/18/20

MaxQuant error at label free normalization step

Hi Cesar, No, I never got it fixed unfortunately. On Sunday, June 14, 2020 at 3:33:21 PM UTC-4, César

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MaxQuant error at label free normalization step

Hi Cesar, No, I never got it fixed unfortunately. On Sunday, June 14, 2020 at 3:33:21 PM UTC-4, César

6/18/20

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