Hi Guys,
You can ignore all these issues, it won't stop your app being published. These 'errors' are actually only advisory and should really be called 'warnings' in my opinion.
Google has recently started doing a lot of scanning of APKs and flagging issues that are not always relevant.
If you are not using the DS Crypt component then the warning about Ciphers is not relevant to you... even if you have, then you probably don't need to worry unless you are processing financial or other sensitive data.
The deep link issue is because we use the ds:// scheme to do single sign on in DS, but the Google Play APK scanners do not understand this. We will probably remove this from the generated manifest in a later release. You could manually remove it if your really want by using a 3rd party manifest editor, but its easier to just ignore it for now.
Regards
David