If RNA metagenome sequence can be used for macrel analysis

[Qi Feng]

Hi, I seached metagomic raw data n ncbi and found some sra labeled with RNA metagenomics. So I wonder if those data can be used with this tool？

[Célio Dias Santos Júnior]

Dear user,

One possible suggestions is for you to assemble and predict the small proteins by side using, for example, trinity and fraggenescan / glimmer and then submit the small proteins to Macrel directly. That's a workaround that should do the trick.

Best,

Celio