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曹翰群
,
Luis Pedro Coelho
2
Jul 12
Download c_AMP batches on the website
Dear Hanqun, The limitation is just to make the interactive exploration fast and fluid, but our
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Download c_AMP batches on the website
Dear Hanqun, The limitation is just to make the interactive exploration fast and fluid, but our
Jul 12
Luis Pedro Coelho
Jun 27
AMPSphere website bugfixes
Dear list, Over the last week, we have fixed a few bugs on the AMPSphere website as well Nothing
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AMPSphere website bugfixes
Dear list, Over the last week, we have fixed a few bugs on the AMPSphere website as well Nothing
Jun 27
Luis Pedro Coelho
Jun 27
ANN: Macrel 1.4.0
Dear List, We released Macrel 1.4.0! The big new feature is that it can use the AMPSphere API to
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ANN: Macrel 1.4.0
Dear List, We released Macrel 1.4.0! The big new feature is that it can use the AMPSphere API to
Jun 27
Casey Stone
Jun 26
AMP ID from name
Hello, I am trying to navigate the resources provided and it's unclear to me how to find the AMP
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AMP ID from name
Hello, I am trying to navigate the resources provided and it's unclear to me how to find the AMP
Jun 26
Pooja Goswami
,
Luis Pedro Coelho
2
Mar 7
prediction from. whole genome
Dear Pooja, Yes, the contigs subcommand is the right way to do that. HTH, Luis Luis Pedro Coelho |
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prediction from. whole genome
Dear Pooja, Yes, the contigs subcommand is the right way to do that. HTH, Luis Luis Pedro Coelho |
Mar 7
Célio Dias Santos Júnior
10/30/23
Re: Error in abundance profiling
Dear Amiteash, I could not reproduce your error. However, it seems that something in the handling of
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Re: Error in abundance profiling
Dear Amiteash, I could not reproduce your error. However, it seems that something in the handling of
10/30/23
Qi Feng
,
Célio Dias Santos Júnior
2
5/23/23
If RNA metagenome sequence can be used for macrel analysis
Dear user, One possible suggestions is for you to assemble and predict the small proteins by side
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If RNA metagenome sequence can be used for macrel analysis
Dear user, One possible suggestions is for you to assemble and predict the small proteins by side
5/23/23
Percy Ramlet
,
Célio Dias Santos Júnior
2
6/20/22
error while running Macrel
Dear Percy, This warning is due to the different versions of scikit-learn used to generate the pickle
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error while running Macrel
Dear Percy, This warning is due to the different versions of scikit-learn used to generate the pickle
6/20/22
Javier Calvelo
,
Luis Pedro Coelho
4
12/19/21
Error running Macrel on Wormbase genome
As a workaround, you can split the genome into chunks. That should work Luis
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Error running Macrel on Wormbase genome
As a workaround, you can split the genome into chunks. That should work Luis
12/19/21
Célio Dias Santos Júnior
3/19/21
AMPSphere has now families, alignments and trees!
Dear AMPSphere community, A short time after the release of AMPSphere v.2021-02, we now make
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AMPSphere has now families, alignments and trees!
Dear AMPSphere community, A short time after the release of AMPSphere v.2021-02, we now make
3/19/21
Alonna Wright
,
Luis Pedro Coelho
5
3/14/21
Mapping predicted AMPs back to original contigs?
Great, but this also indicates a lack of good documentation, which we will work on. Thanks Luis Luis
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Mapping predicted AMPs back to original contigs?
Great, but this also indicates a lack of good documentation, which we will work on. Thanks Luis Luis
3/14/21
Célio Dias Santos Júnior
3/4/21
AMPSphere v.2021-02 is now available!
Dear fellow researchers, We are glad to inform you that the database AMPSphere v.2021-02 is now
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AMPSphere v.2021-02 is now available!
Dear fellow researchers, We are glad to inform you that the database AMPSphere v.2021-02 is now
3/4/21
Célio Dias Santos Júnior
12/22/20
New Release of Macrel (v.1.0.0)
Dear users, We from AMPsphere wish you happy holidays. There are some announcements to make before
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New Release of Macrel (v.1.0.0)
Dear users, We from AMPsphere wish you happy holidays. There are some announcements to make before
12/22/20
celio.diasjunior
,
Luis Pedro Coelho
2
11/25/20
Great news: the paper describing Macrel is in press!
We are also shortly going to release Macrel 1.0 to coincide with the publication. At the moment, it
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Great news: the paper describing Macrel is in press!
We are also shortly going to release Macrel 1.0 to coincide with the publication. At the moment, it
11/25/20
Luis Pedro Coelho
,
Martin Klapper
5
10/28/20
ANN Macrel release 0.6.0
Unfortunately, it seems that atomicwrites causes issues on Mac OSX (https://github.com/bioconda/
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ANN Macrel release 0.6.0
Unfortunately, it seems that atomicwrites causes issues on Mac OSX (https://github.com/bioconda/
10/28/20
Martin Klapper
, …
Luis Pedro Coelho
5
9/26/20
log file flag and AMP size cutoff
On Wed, 23 Sep 2020, at 10:04 AM, Martin Klapper wrote: Hi all, at first - thanks for developing
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log file flag and AMP size cutoff
On Wed, 23 Sep 2020, at 10:04 AM, Martin Klapper wrote: Hi all, at first - thanks for developing
9/26/20