Can i visualize the output file as phylogenomic tree?

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JL Campo

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Dec 20, 2018, 3:13:09 AM12/20/18
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Can i visualize the output file as phylogenomic tree?

Csaba Kerepesi

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Dec 26, 2018, 3:57:44 AM12/26/18
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Thank you for the question! Good idea, but unfortunatelly, we have not developed such a tool yet. I recommend to use MEGAN metagenomic analysis tool for phylogenetic tree visualization of AmphoraNet. For that, you need to convert AmphoraNet output file to a MEGAN format file (also a simple text file) and than read it with MEGAN.

Another useful tool may be Krona chart.

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