Sample input files to try AmphoraNet

[Csaba Kerepesi]

Here we collected input files and databases to try AmphoraNet.

Bacterial genomes:

- Treponema pallidum subsp. pallidum DAL-1, complete genome  (1.1 MB, 1.1 million bp, running time: about 30 min.)
- More Bacteria Genomes from EBI

Archaeal genomes:

- Archaeoglobus profundus DSM 5631, complete genome (1.5 MB, 1.5 million bp, running time: about 15 min.)
- More archaeal Genomes from EBI

Metagenomic sequences:

- Human Genome Project - Buccal Mucosa sample (SRS050007) (0.7 MB, 0.7 million bp, running time: about 20 min.)
- More Human Microbiome Project: Illumina WGS Reads and Assemblies
- NCBI: Sequence Read Archive (SRA)

- Type 2 Diabetes gut metagenome (microbiome) data from 368 Chinese samples and updated metagenome gene catalog

(Updated: Jan 11, 2017)