do you mean the "ArduinoFDC", the project written by David Hansel that uses an Arduino to control a real floppy drive? (
https://github.com/dhansel/ArduinoFDC)
Or are you talking about another sketch?
If you're talking about another sketch, I'm curious to know about that.
If you are referring to the ArduinoFDC, I tried to upload it to an Arduino Mega, an Arduino Micro Pro (iirc) and Arduino Uno without problem. I didn't try to connect a floppy drive yet, though...