question i have is how you are making the connection between the Altair Duino and your PC running linux.
are you using the micro usb?
are you using the Serial port 9 pin?
are you using a wifi modem?
depending on how you have mapped your serial ports you have to remember to use the B option with pcput and pcget.
This is just my personal experience.
If you are using the wifi connection that will be the issue.
this is because it will require telnet enabled on these modems and that causes interference with Xmodem transfers.