Dear Dr. Nathan Salomonis.
I'm reading your paper about Human Cell Atlas - "The Human Cell Atlas bone marrow single-cell interactive web portal", Experimental Hematology, 2018
And I'm tyring to following your procedure using your tools, AltAnalyze, following the supplementary document.
But when I tried to the first command, I met the error like bellow.
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$python AltAnalyze.py --species Hs --update Official --version EnsMart72 --additional all
Using the Config location: /home/redohyi/singleCell01/altanalyze-master/Config//report.log
/home/redohyi/singleCell01/altanalyze-master/Config//options.txt
Options.txt found in local Config = True ...confirmed found
Running commandline options
Arguments input: ['AltAnalyze.py', '--species', 'Hs', '--update', 'Official', '--version', 'EnsMart72', '--additional', 'all']
Current database version: EnsMart72
AltAnalyze.py --species Hs --update Official --version EnsMart72 --additional all
Downloading the following file: species_all.txt
Downloading the following file: source_data.txt
Downloading the following file: array_versions.txt
Finished downloading the latest configuration files.
Traceback (most recent call last):
File "AltAnalyze.py", line 8429, in runCommandLineVersion
commandLineRun()
File "AltAnalyze.py", line 7949, in commandLineRun
species_full = species_names[species]
KeyError: 'Hs'
-------
My sysmtem is ...
Ubuntu 19.10
conda 4.8.3
Python 2.7.16 :: Anaconda , Inc
Can I get any information about this issue?
Thank you.
==============================================
Joung-hwan Oh, Ph.D.
Laboratory of Computational Biology
School of Biological Sciences
College of Natural Sciences,
Seoul National University,
Building 504, Room#402, 1 Gwanak-ro, Gwanak-gu,
Seoul, 08826, Republic of KOREA
Phone: +82-2-880-4265 (lab), +82-10-7417-0518 (mobile)
Email: par...@snu.ac.kr