Re: KeyError: 'Hs' at the first command in running procedure of the supplementary document your published article

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Nathan Salomonis

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Jun 28, 2020, 6:59:28 PM6/28/20
to paran...@gmail.com, Alternative Splicing and Functional Prediction
Greetings,

The command looks fine and the website database is online. Can you try again?

Best,
Nathan

> On Jun 28, 2020, at 5:07 AM, par...@snu.ac.kr <paran...@gmail.com> wrote:
>
> 
> Hello.
>
> I'm reading your publihsed article about Human Cell Atlase
> -- The Human Cell Atlas bone marrow single-cell interactive web portal,
> -- https://www.exphem.org/article/S0301-472X(18)30805-1/fulltext
>
> And I'm trying your procedure using AltAnalyze followint the supplementary document.
> But I got the message like bellow.
>
> --------------
> $ python AltAnalyze.py --species Hs --update Official --version EnsMart72 --additional all
> Using the Config location: /home/redohyi/singleCell01/altanalyze-master/Config//report.log
> /home/redohyi/singleCell01/altanalyze-master/Config//options.txt
> Options.txt found in local Config = True ...confirmed found
>
> Running commandline options
>
> Arguments input: ['AltAnalyze.py', '--species', 'Hs', '--update', 'Official', '--version', 'EnsMart72', '--additional', 'all']
>
> Current database version: EnsMart72
> AltAnalyze.py --species Hs --update Official --version EnsMart72 --additional all
> Downloading the following file: species_all.txt
>
> Downloading the following file: source_data.txt
>
> Downloading the following file: array_versions.txt
>
> Finished downloading the latest configuration files.
> Traceback (most recent call last):
> File "AltAnalyze.py", line 8429, in runCommandLineVersion
> commandLineRun()
> File "AltAnalyze.py", line 7949, in commandLineRun
> species_full = species_names[species]
> KeyError: 'Hs'
> --------------
>
> And my system is...
>
> Ubuntu 19.10
> conda 4.8.3
> Python 2.7.16 :: Anaconda, Inc.
>
>

paran...@gmail.com

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Jul 7, 2020, 12:04:39 AM7/7/20
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