Re: AltAnalyze User Group IOError: Error only with Cell Harmony

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Nathan Salomonis

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Jul 26, 2020, 9:42:19 AM7/26/20
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Hi Brian,

There is a bug in current release with one of the cellHarmony options, that we have fixed but need to upload. Can you try to set the alignment method from community to centroid in the software?

Best,
Nathan

On Jul 26, 2020, at 8:46 AM, Brian Estevez <beste...@gmail.com> wrote:


Dear Altanalyze team,

Error when I try to run Cell Harmony.
 
I keep receiving the same error message  (even when using the demo data files): IOError: [Erno 13] Permission denied: 'C:\\ProgramFiles\\AltAnalyze_v.2.1.4.1-Win64'
I do right-click  to run the program as an administrator. I have successful run the software, done ICGS and analysis on 10X genomics chromium matrix.mtx files.  So not sure why this is happening only with Cell harmony. Attached is a log-file.



Best,

-Brian 

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<AltAnalyze_report-20200707-092543.log>

beste...@gmail.com

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Jul 26, 2020, 10:34:19 AM7/26/20
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Nathan,

Still has the same error message even using centroids (images shown below).

image.png
image.png
Best,

Brian

Nathan Salomonis

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Jul 26, 2020, 10:38:58 AM7/26/20
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Hi Brian,

Can you try moving the Demo folder out of the AltAnalyze program folder and try again with the same options?

Best,
Nathan

On Jul 26, 2020, at 10:34 AM, "beste...@gmail.com" <beste...@gmail.com> wrote:


Nathan,

Still has the same error message even using centroids (images shown below).

<image.png>

<image.png>

Best,

Brian
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