Wish I could help with an anecdotal story, but the first time I remember reading about Glitch City online was in early 2002, which is already after your earliest known date.
It wouldn't surprise me if it were around during the late 90's though, similar to "L is Real" and the backwards long-jump in Mario 64. I'm actually in a similar boat as you, trying to find some of the earliest mentions of "L is Real" online. (Of course, Usenet groups are the best go-to) Quick tangent, but everyone forgot that the number was typed "L is Real 2041" in the early years, I have no idea when it switched to "2401" as is dominant today. Maybe around 2006?
Back to Pokemon, sadly, it might have just all been on sites that weren't archived... or the playground. There was a concentrated effort to archive Geocities websites, but what about the more obscure web hosts of the 90's? I'm always wondering if they were on those sites instead.
Anyway, Google Groups is shutting down tomorrow, so if you want to reply by chance, my email's pictodev01 at
gmail.com