I forgot to mention I use the Disk utility to format/encrypt my disks
from Ubuntu, usually the dmcrypt package is enough to do this from
command line.
I wrote about this a while ago, perhaps the information is still
useful/valid:
http://www.fabianrodriguez.com/blog/2009/01/21/easy-removable-storage-encryption-that-works-with-hardy-and-intrepid
Under Disks/Filesystems such partitions/disks are recognized as
crypt_LUKS btw. I don't seek (*yet*) support for all this in the web
interface, but at least being able to manually mount/r+w such disks
would be a great improvement.