Thank you for the ideas.
Don't know if you're talking about "Flow Control". I do know that Flow Control is disabled on everything (NAS, switch, and pc)
The HDD LEDs stop blinking (go solid blue) during the pause, they resume blinking after the pause until the next pause or when the transfer is finished.
The network LED on the NAS stays solid all the time. The network LEDs on my switch and PC blink a lot LESS during a pause.
The NAS is setup in RAID 1 with two identical hard drives (1TB). After further testing I found that the HDD LED's do alternate (right will blink for a while and then left and then right...) when downloading a large file from the NAS.
It is not a busy network, only a couple computers and a printer. Traffic is mainly web browsing, email and SMB transfers to NAS. I'll try setting up shares on another computer and see if the same transfer issues occur.
NOTE: I recently did a few uploads that did not have the stop and go (pausing) issue. So right now it seems to be random as to whether there'll be issues. I've attached a screenshot of my task manager showing one upload that had no issues, and then a second upload plagued by the "pausing" issue.
I have a theory that this may be related to the filesystem (EXT4).... As I stopped seeing the issue in random uploads after I had uploaded a bunch of large files and deleted them. Is it possible that these issues occur when writing to "clean" or "unwritten" clusters on the NAS??
Thanks again for all the support!