Hi Alex,
I did not open the bug because I could not reproduce it.
But here is what happened:
after updating to 0.5.9, during the gradle sync, it told me that a module needed to be added (to the settings.gradle I guess), so I added it, and the sync failed due to the eachDependency bug.
At that point, the above issue was there again, and when clicking it I would see my modules greyed out but not selectable.
This was consistent until I reverted the first change it did on the settings.gradle, then all was fine.