bogus "same input jar is specified twice" errors since going from 0.8.14 to 1.0.0rc4?

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Ken Yee

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Dec 5, 2014, 4:32:28 PM12/5/14

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I'm having this weird issue w/ 1.0.0RC4 of Android Studio and Gradle that I just don't understand.

This is a jar file that is in the app/libs directory of the project and is included in the build.gradle with:

compile files('libs/metadata-extractor-2.6.4.jar')

Error:Execution failed for task ':app:proguardDevelopmentDebug'.

> java.io.IOException: The same input jar [/Users/kenyee/mustbin-android/app/libs/metadata-extractor-2.6.4.jar] is specified twice.

I looked at the --debug output from doing

gradle assembleDevelopmentDebug

and the jar is only listed once for the java command line that builds it:

16:23:50.382 [DEBUG] [org.gradle.api.internal.tasks.compile.NormalizingJavaCompiler] Compiler arguments: -source 1.7 -target 1.7 -d /Users/kenyee/mustbin-android/app/build/intermediates/classes/development/debug -g -encoding UTF-8 -bootclasspath /Users/kenyee/android-sdk/platforms/android-21/android.jar -classpath /Users/kenyee/.gradle/caches/modules-2/files-2.1/com.madgag/scprov-jdk15on/1.47.0.3/a1ff8a74a7013c4ada7e4d20d335b302d147ddd1/scprov-jdk15on-1.47.0.3.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/com.squareup.okhttp/okhttp/1.5.4/7b7c9e5a6a0d69a1571968805dc1d1f19b57da26/okhttp-1.5.4.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/org.apache.commons/commons-io/1.3.2/b6dde38349ba9bb5e6ea6320531eae969985dae5/commons-io-1.3.2.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/com.google.code.gson/gson/2.2.4/a60a5e993c98c864010053cb901b7eab25306568/gson-2.2.4.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/commons-io/commons-io/1.3.2/b6dde38349ba9bb5e6ea6320531eae969985dae5/commons-io-1.3.2.jar:/Users/kenyee/mustbin-android/app/build/intermediates/exploded-aar/it.sephiroth.android.library.horizontallistview/library/1.2.1/classes.jar:/Users/kenyee/mustbin-android/app/build/intermediates/exploded-aar/com.android.support/support-v4/20.0.0/classes.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/com.madgag/sc-light-jdk15on/1.47.0.3/ee5043d8e50e46b0daca4e798f52d7532c27b0c4/sc-light-jdk15on-1.47.0.3.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/com.octo.android.robospice/robospice-cache/1.4.12/72acbbe328cc32b67315611f973e8e8149a83cf3/robospice-cache-1.4.12.jar:/Users/kenyee/mustbin-android/app/build/intermediates/exploded-aar/com.github.machinarius/preferencefragment/0.1.1/classes.jar:/Users/kenyee/android-sdk/extras/android/m2repository/com/android/support/support-annotations/20.0.0/support-annotations-20.0.0.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/com.squareup.picasso/picasso/2.2.0/74137f8d9aac26dd9463efe32271f2be8d41cda9/picasso-2.2.0.jar:/Users/kenyee/mustbin-android/app/build/intermediates/exploded-aar/com.android.support/support-v13/20.0.0/classes.jar:/Users/kenyee/mustbin-android/app/libs/metadata-extractor-2.6.4.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/com.nineoldandroids/library/2.4.0/e9b63380f3a242dbdbf103a2355ad7e43bad17cb/library-2.4.0.jar:/Users/kenyee/mustbin-android/app/libs/aws-android-sdk-1.7.1.1-s3.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/com.nhaarman.listviewanimations/library/2.6.0/59351ccb0a1631d30358f6a92749a072f2df7602/library-2.6.0.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/com.fasterxml.jackson.core/jackson-annotations/2.3.1/cbf0cc07675681a7703c900dd5f60288f654f1ba/jackson-annotations-2.3.1.jar:/Users/kenyee/mustbin-android/app/build/intermediates/exploded-aar/com.edmodo/cropper/1.0.1/classes.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/com.madgag/scpkix-jdk15on/1.47.0.3/5a2856bb520c462a474802b73f12a81be4cfd200/scpkix-jdk15on-1.47.0.3.jar:/Users/kenyee/mustbin-android/app/libs/tokenautocomplete-1.2.1.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/com.jakewharton.timber/timber/2.4.2/1f875e143b83cf04899dd6db12765fe9ba483656/timber-2.4.2.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/org.apache.commons/commons-lang3/3.3.2/90a3822c38ec8c996e84c16a3477ef632cbc87a3/commons-lang3-3.3.2.jar:/Users/kenyee/mustbin-android/app/build/intermediates/exploded-aar/com.github.castorflex.verticalviewpager/library/19.0.1/classes.jar:/Users/kenyee/mustbin-android/app/build/intermediates/exploded-aar/com.google.android.gms/play-services/5.0.89/classes.jar:/Users/kenyee/mustbin-android/app/build/intermediates/exploded-aar/se.emilsjolander/stickylistheaders/2.4.1/classes.jar:/Users/kenyee/mustbin-android/app/build/intermediates/exploded-aar/com.android.support/support-v13/20.0.0/libs/internal_impl-20.0.0.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/com.crashlytics.android/crashlytics/1.1.13/e821eafa1bf489a26bdb71f95078c26785b37a1/crashlytics-1.1.13.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/de.greenrobot/eventbus/2.2.0/8957e80562a7e6ac5d9421e46e0898336c06c307/eventbus-2.2.0.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/com.fasterxml.jackson.core/jackson-core/2.3.1/f9f7185c92ca5fefe2fb3efdeb477a67c96ea2d0/jackson-core-2.3.1.jar:/Users/kenyee/mustbin-android/app/build/intermediates/exploded-aar/com.github.johnkil.android-robototextview/robototextview/2.2.0/classes.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/com.octo.android.robospice/robospice-retrofit/1.4.12/512aec0c55ee38deedd46aca76925cbbc342e790/robospice-retrofit-1.4.12.jar:/Users/kenyee/mustbin-android/app/libs/aws-android-sdk-1.7.1.1-core-no-third-party.jar:/Users/kenyee/mustbin-android/app/build/intermediates/exploded-aar/com.github.chrisbanes.photoview/library/1.2.3/classes.jar:/Users/kenyee/mustbin-android/app/build/intermediates/exploded-aar/com.commonsware.cwac/camera/0.6.10/classes.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/com.jakewharton/butterknife/5.0.0/34f9a9915c4ac33f97a9339f4caad41cb02638d8/butterknife-5.0.0.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/com.jakewharton/disklrucache/2.0.2/93b399470e72c0bc8cb52379943b63c9aa586cd8/disklrucache-2.0.2.jar:/Users/kenyee/mustbin-android/app/build/intermediates/exploded-aar/com.android.support/support-v4/20.0.0/libs/internal_impl-20.0.0.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/com.octo.android.robospice/robospice/1.4.12/a765a12a6f549c15b583a275c1f25c8cf656c0fb/robospice-1.4.12.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/de.keyboardsurfer.android.widget/crouton/1.8.1/3f7f33cca0b0fcec104a135bb5737cdb811fb6ed/crouton-1.8.1.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/com.squareup.retrofit/retrofit/1.5.0/54271c5c7a4dfa1c7cd53d0b10956ea35d32abb0/retrofit-1.5.0.jar:/Users/kenyee/.gradle/caches/modules-2/files-2.1/com.fasterxml.jackson.core/jackson-databind/2.3.1/c4096a8323bbbcbeda072e3def123a9b66783361/jackson-databind-2.3.1.jar 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/Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/security/SecurityUtil.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/signup/RegisterQuestionsFragment.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/signup/RegisterUserFragment.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/signup/SignUpActivity.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/span/MbSpannableStringBuilder.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/span/TypefaceSpan.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/sync/SyncManager.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/templates/ActionTemplate.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/templates/BinTemplate.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/templates/CardFieldsTemplate.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/templates/DocTemplate.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/templates/KeyValues.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/templates/KeyValuesTemplate.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/templates/TemplateManager.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/users/AddContactsActivity.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/users/AddContactsFragment.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/users/ContactsFragment.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/users/EditProfileFragment.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/users/ProfileActivity.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/users/ProfileFragment.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/utils/CheckableLayout.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/utils/DeviceUtil.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/utils/FileUtil.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/utils/FormUtil.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/utils/ImageUtil.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/utils/MD5.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/utils/ParallaxTransformer.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/utils/PasswordUtil.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/utils/Preferences.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/utils/SearchViewFormatter.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/utils/TimeUtil.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/wizard/AddCardActivity.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/wizard/AddKeyValueActivity.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/wizard/AddMultiDocActivity.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/wizard/AddTextNoteActivity.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/wizard/Card.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/wizard/FieldValidation.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/wizard/KeyValue.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/wizard/MultiDoc.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/wizard/TextNote.java /Users/kenyee/mustbin-android/app/src/main/java/com/mustbin/mustbin/wizard/WizInfoIntf.java /Users/kenyee/mustbin-android/app/src/main/java/org/codepond/wizardroid/Wizard.java /Users/kenyee/mustbin-android/app/src/main/java/org/codepond/wizardroid/WizardFlow.java /Users/kenyee/mustbin-android/app/src/main/java/org/codepond/wizardroid/WizardFragment.java /Users/kenyee/mustbin-android/app/src/main/java/org/codepond/wizardroid/WizardStep.java /Users/kenyee/mustbin-android/app/src/main/java/org/codepond/wizardroid/infrastructure/Bus.java /Users/kenyee/mustbin-android/app/src/main/java/org/codepond/wizardroid/infrastructure/Disposable.java /Users/kenyee/mustbin-android/app/src/main/java/org/codepond/wizardroid/infrastructure/Subscriber.java /Users/kenyee/mustbin-android/app/src/main/java/org/codepond/wizardroid/infrastructure/events/StepCompletedEvent.java /Users/kenyee/mustbin-android/app/src/main/java/org/codepond/wizardroid/layouts/BasicWizardLayout.java /Users/kenyee/mustbin-android/app/src/main/java/org/codepond/wizardroid/persistence/ContextManager.java /Users/kenyee/mustbin-android/app/src/main/java/org/codepond/wizardroid/persistence/ContextManagerImpl.java /Users/kenyee/mustbin-android/app/src/main/java/org/codepond/wizardroid/persistence/ContextVariable.java /Users/kenyee/mustbin-android/app/build/generated/source/r/development/debug/android/support/v4/preferencefragment/R.java /Users/kenyee/mustbin-android/app/build/generated/source/r/development/debug/com/commonsware/cwac/camera/R.java /Users/kenyee/mustbin-android/app/build/generated/source/r/development/debug/com/devspark/robototextview/R.java /Users/kenyee/mustbin-android/app/build/generated/source/r/development/debug/com/edmodo/cropper/R.java /Users/kenyee/mustbin-android/app/build/generated/source/r/development/debug/com/google/android/gms/R.java /Users/kenyee/mustbin-android/app/build/generated/source/r/development/debug/com/mustbin/mustbin/Manifest.java /Users/kenyee/mustbin-android/app/build/generated/source/r/development/debug/com/mustbin/mustbin/R.java /Users/kenyee/mustbin-android/app/build/generated/source/r/development/debug/it/sephiroth/android/library/R.java /Users/kenyee/mustbin-android/app/build/generated/source/r/development/debug/se/emilsjolander/stickylistheaders/R.java /Users/kenyee/mustbin-android/app/build/generated/source/buildConfig/development/debug/com/mustbin/mustbin/BuildConfig.java

Ken Yee

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Dec 5, 2014, 4:59:09 PM12/5/14

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this was a proguard config issue...this was in it:

-libraryjar libs

-libraryjar metadata-extractor...

So after that, I get:

Warning:can't write resource [META-INF/NOTICE.txt] (Duplicate zip entry [commons-io-1.3.2.jar:META-INF/NOTICE.txt])

:app:proguardDevelopmentDebug FAILED

Error:Execution failed for task ':app:proguardDevelopmentDebug'.

> java.io.IOException: Can't write [/Users/kenyee/mustbin-android/app/build/intermediates/classes-proguard/development/debug/classes.jar] (Can't read [/Users/kenyee/.gradle/caches/modules-2/files-2.1/commons-io/commons-io/1.3.2/b6dde38349ba9bb5e6ea6320531eae969985dae5/commons-io-1.3.2.jar(;;;;;;!META-INF/MANIFEST.MF)] (Duplicate zip entry [commons-io-1.3.2.jar:org/apache/commons/io/FileUtils.class]))

even after removing libraryjars and also tried adding/removing injars...

Xavier Ducrohet

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Dec 5, 2014, 5:36:02 PM12/5/14

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Don't use -libraryjars or -injar or -oujar in your proguard file. Gradle does this for you automatically.

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Xavier Ducrohet
Android SDK Tech Lead
Google Inc.
http://developer.android.com | http://tools.android.com

Please do not send me questions directly. Thanks!

Ken Yee

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Dec 5, 2014, 7:40:59 PM12/5/14

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On Friday, December 5, 2014 5:36:02 PM UTC-5, Xavier Ducrohet wrote:

Don't use -libraryjars or -injar or -oujar in your proguard file. Gradle does this for you automatically.

Yep, I took those all out.

Turns out the duplicate class issue was solved by doing this even though it makes no sense:

http://stackoverflow.com/questions/26059838/duplicate-zip-entry-after-gradle-plugin-v0-13-1

And even though I have the compile and gradle VM options set in Android Studio to these rather high options (which worked fine w/ 0.8.14):

-Xmx2048m -XX:MaxPermSize=1024m -Xms512m

I'm getting an outofmemory error w/ the program in the latest version of Android Studio compared to the old 0.8.14 version:

Error:Execution failed for task ':app:dexDevelopmentDebug'.

> com.android.ide.common.internal.LoggedErrorException: Failed to run command:

/Users/kenyee/android-sdk/build-tools/21.1.1/dx --dex --force-jumbo --no-optimize --output /Users/kenyee/mustbin-android/app/build/intermediates/dex/development/debug --input-list=/Users/kenyee/mustbin-android/app/build/intermediates/tmp/dex/development/debug/inputList.txt

Error Code:

Output:

warning: Ignoring InnerClasses attribute for an anonymous inner class

(com.amazonaws.javax.xml.stream.StaxErrorReporter$1) that doesn't come with an

associated EnclosingMethod attribute. This class was probably produced by a

compiler that did not target the modern .class file format. The recommended

solution is to recompile the class from source, using an up-to-date compiler

and without specifying any "-target" type options. The consequence of ignoring

this warning is that reflective operations on this class will incorrectly

indicate that it is *not* an inner class.

warning: Ignoring InnerClasses attribute for an anonymous inner class

(com.amazonaws.javax.xml.stream.XMLReaderImpl$1) that doesn't come with an

associated EnclosingMethod attribute. This class was probably produced by a

compiler that did not target the modern .class file format. The recommended

solution is to recompile the class from source, using an up-to-date compiler

and without specifying any "-target" type options. The consequence of ignoring

this warning is that reflective operations on this class will incorrectly

indicate that it is *not* an inner class.

warning: Ignoring InnerClasses attribute for an anonymous inner class

(com.amazonaws.javax.xml.stream.xerces.util.SecuritySupport12$1) that doesn't come with an

associated EnclosingMethod attribute. This class was probably produced by a

compiler that did not target the modern .class file format. The recommended

solution is to recompile the class from source, using an up-to-date compiler

and without specifying any "-target" type options. The consequence of ignoring

this warning is that reflective operations on this class will incorrectly

indicate that it is *not* an inner class.

warning: Ignoring InnerClasses attribute for an anonymous inner class

(com.amazonaws.javax.xml.stream.xerces.util.SecuritySupport12$2) that doesn't come with an

associated EnclosingMethod attribute. This class was probably produced by a

compiler that did not target the modern .class file format. The recommended

solution is to recompile the class from source, using an up-to-date compiler

and without specifying any "-target" type options. The consequence of ignoring

this warning is that reflective operations on this class will incorrectly

indicate that it is *not* an inner class.

warning: Ignoring InnerClasses attribute for an anonymous inner class

(com.amazonaws.javax.xml.stream.xerces.util.SecuritySupport12$3) that doesn't come with an

associated EnclosingMethod attribute. This class was probably produced by a

compiler that did not target the modern .class file format. The recommended

solution is to recompile the class from source, using an up-to-date compiler

and without specifying any "-target" type options. The consequence of ignoring

this warning is that reflective operations on this class will incorrectly

indicate that it is *not* an inner class.

warning: Ignoring InnerClasses attribute for an anonymous inner class

(com.amazonaws.javax.xml.stream.xerces.util.SecuritySupport12$4) that doesn't come with an

associated EnclosingMethod attribute. This class was probably produced by a

compiler that did not target the modern .class file format. The recommended

solution is to recompile the class from source, using an up-to-date compiler

and without specifying any "-target" type options. The consequence of ignoring

this warning is that reflective operations on this class will incorrectly

indicate that it is *not* an inner class.

UNEXPECTED TOP-LEVEL ERROR:

java.lang.OutOfMemoryError: GC overhead limit exceeded

at com.android.dx.dex.code.RopTranslator.outputBlock(RopTranslator.java:253)

at com.android.dx.dex.code.RopTranslator.outputInstructions(RopTranslator.java:233)

at com.android.dx.dex.code.RopTranslator.translateAndGetResult(RopTranslator.java:212)

at com.android.dx.dex.code.RopTranslator.translate(RopTranslator.java:105)

at com.android.dx.dex.cf.CfTranslator.processMethods(CfTranslator.java:317)

at com.android.dx.dex.cf.CfTranslator.translate0(CfTranslator.java:137)

at com.android.dx.dex.cf.CfTranslator.translate(CfTranslator.java:93)

at com.android.dx.command.dexer.Main.processClass(Main.java:729)

at com.android.dx.command.dexer.Main.processFileBytes(Main.java:673)

at com.android.dx.command.dexer.Main.access$300(Main.java:82)

at com.android.dx.command.dexer.Main$1.processFileBytes(Main.java:602)

at com.android.dx.cf.direct.ClassPathOpener.processArchive(ClassPathOpener.java:284)

at com.android.dx.cf.direct.ClassPathOpener.processOne(ClassPathOpener.java:166)

at com.android.dx.cf.direct.ClassPathOpener.process(ClassPathOpener.java:144)

at com.android.dx.command.dexer.Main.processOne(Main.java:632)

at com.android.dx.command.dexer.Main.processAllFiles(Main.java:510)

at com.android.dx.command.dexer.Main.runMonoDex(Main.java:279)

at com.android.dx.command.dexer.Main.run(Main.java:245)

at com.android.dx.command.dexer.Main.main(Main.java:214)

at com.android.dx.command.Main.main(Main.java:106)

It's almost as if proguard is being fed duplicate jar files :-(

Xavier Ducrohet

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Dec 5, 2014, 9:20:20 PM12/5/14

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if dx is running out of memory you can change its memory allocation (it runs in its own VM so the configuration for Gradle doesn't matter.).

http://tools.android.com/tech-docs/new-build-system/user-guide#TOC-dex-options

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Ken Yee

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Dec 5, 2014, 9:45:42 PM12/5/14

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On Friday, December 5, 2014 9:20:20 PM UTC-5, Xavier Ducrohet wrote:

if dx is running out of memory you can change its memory allocation (it runs in its own VM so the configuration for Gradle doesn't matter.).

http://tools.android.com/tech-docs/new-build-system/user-guide#TOC-dex-options

Adding

javaMaxHeapSize "2048M"

to dexOptions fixed it. That explains why cranking up the VM memory options made no difference...I had even tried 4G of memory :-)