I'm writing to let you know that I've uploaded new documentation for how to do MCMC analyses to the ADMB website:
This guide is mostly targeted at new ADMB users, describing workflow and big picture concepts, but also describes the hybrid algorithm and some advanced tuning options. The guide is a collaboration with colleagues and we eventually will merge it into the manual.
We are also working to improve future versions to make the MCMC workflow easier and output more informative, particularly for new users. The guide is an open document and we would welcome any feedback, contributions, or further ideas on how to improve on the Bayesian capabilities of ADMB.
Quantitative Ecology and Resource Management
University of Washington