recipe for target

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Safiqul Islam

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Feb 22, 2020, 2:36:23 PM2/22/20
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i did not get it how should i overcome this problem, please help


$ abyss-pe name=sp_reference-f.fa k=51 in="O_GA54_1.fq.gz P_GA54_2.fq.gz"
ABYSS -k51 -q3    --coverage-hist=coverage.hist -s Montifringilla_nivalis_reference-f.fa-bubbles.fa  -o Montifringilla_nivalis_reference-f.fa-1.fa O_GA54_1.fq.gz P_GA54_2.fq.gz
ABySS 2.2.3
ABYSS -k51 -q3 --coverage-hist=coverage.hist -s Montifringilla_nivalis_reference-f.fa-bubbles.fa -o Montifringilla_nivalis_reference-f.fa-1.fa O_GA54_1.fq.gz P_GA54_2.fq.gz
Reading `O_GA54_1.fq.gz'...
`O_GA54_1.fq.gz': discarded 851807 reads shorter than 51 bases
`O_GA54_1.fq.gz': discarded 349 reads containing non-ACGT characters
Reading `P_GA54_2.fq.gz'...
/home/linuxbrew/.linuxbrew/bin/abyss-pe:554: recipe for target 'Montifringilla_nivalis_reference-f.fa-1.fa' failed
make: *** [Montifringilla_nivalis_reference-f.fa-1.fa] Killed

Johnathan Wong

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Feb 24, 2020, 2:26:08 PM2/24/20
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Hello,

Can you `ls` your directory and show me what you have?  And what is the memory of your system?


Johnathan
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