How does ABySS determine "fragment size"

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Allison S

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Apr 22, 2020, 12:46:06 PM4/22/20
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Good Day,


Regarding the calculation of insert size, does ABySS 2.0 report on only the distance between the two read pairs, or does it report on the distance between the two read pairs, plus the length of the two read pair sequences?


Kind regards,
Allison

Lauren Coombe

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Apr 22, 2020, 12:48:32 PM4/22/20
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HI Allison,

We answered your question on our github page:

Lauren
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