sort: write failed: /tmp/sortdlVUOB: No space left on device

[T.Hamdi Kitapci]

Hi,
I am getting this error sort: write failed: /tmp/sortdlVUOB: No space left on device /tmp folder of the cluster node that I am running the job is very small how can I change this directory to write on a different location? I think this is a problem with the sort gnu sort can have an option like -T DIR to specify a directory, how can I specify this for abyss ?

Thanks
Best Regards
T. Hamdi Kitapci

[Anthony Raymond]

Hi Hamdi,

You can change the temp folder that sort uses by using the TMPDIR environment variable:

export TMPDIR=/path/to/enough/space

abyss-pe …

Cheers,

Tony

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