Hi ABySS group!
I ran abyss-pe with Bloom filter which reported a false positive rate (FPR) in the log file. Below is part of the log file:
Loaded 478640000 reads into Bloom filter
Loaded 478650000 reads into Bloom filter
Loaded 478658235 reads from `/home/peiwen/WGS_whitefish_2018/WF_1181_S2_L004_R2_001.fastq.gz` into Bloom filter
Bloom filter FPR: 3.94%
Counting Bloom filter stats:
#counters = 190887435392
#size (B) = 190887435392
threshold = 2
popcount = 13530549696
FPR = 0.00252%
I wonder which FPR is the one I should keep track of and how the two FPR are different?