Appending additional protein identifiers to final output
java.sql.SQLException: statement is not in batch mode
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source)
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source)
at org.hsqldb.jdbc.JDBCUtil.sqlExceptionSQL(Unknown Source)
at org.hsqldb.jdbc.JDBCPreparedStatement.executeBatch(Unknown Source)
at abacus.hyperSQLObject.addProteinLengths(hyperSQLObject.java:2008)
at abacus.abacus.main(abacus.java:226)
at mainFunction.mainFunction.main(mainFunction.java:44)
Caused by: org.hsqldb.HsqlException: statement is not in batch mode
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.error.Error.error(Unknown Source)
... 5 more
I have my individual interact*pep.xml, interact*prot.xml as well as interact-combined.prot.xml files, and the fasta-file in the folder in which I'm trying to run abacus (in addition to the abacus parameters file). We've tested this on other files on the same server, and in these cases abacus works fine. I have regenerated (a new) fasta-file with decoys several times, as well as searched the data. Everything has been double checked for typos.