gene map file

Brett Phinney

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Jan 17, 2013, 7:36:26 PM1/17/13

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Can someone point me in the right direction on how to make a gene map file for both a uniprot human database and a tair database. The links to the software mentioned in the supplemental info PDF from the manuscript are no longer working

Cheers

Brett

Damian

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Jan 17, 2013, 8:49:46 PM1/17/13

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Hi Brett

You can find the two java apps for gene mapping at the main Abacus
website at sourceforge:
http://sourceforge.net/projects/abacustpp/files/

The file you want is 'uniprotMapper.jar'

The command line to execute it is: java -jar uniprotMapper.jar

This will tell you how to use it.

tair is not a default organism the program downloads though.
But I might be able to get it for you. Do you know the TAXONID for it?

Damian

--
Damian Fermin, Ph.D.
damian...@gmail.com
http://damianfermin.com

Brett Phinney

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Jan 18, 2013, 1:01:52 PM1/18/13

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I'll give that a shot...Sorry Tair is a arabidopsis database. Most of the arabidopsis folks prefer it to uniprot even though uniprot contains cross-references to tair