error in scantwo

[nata...@gmail.com]

Hi

I have a problem running scantwo with n.perm>0 (e.g n.perm=10) when I use this code-

mycross<-calc.genoprob(mycross,2,map.function="kosambi")

operm2<-scantwo(mycross,pheno.col=c(7:8),method="hk",n.perm=10)

I get the error-

Permutation 1 

Error in dimnames(out$lod) <- `*vtmp*` : 'dimnames' applied to non-array

mycross info-

  147  individuals

3036  markers

14  phenotypes

 --Cross type: f2 

It used to work but since I run the script with n.cluster=2 as a local job, the error popped up-

Error in checkForRemoteErrors(val) : 

  2 nodes produced errors; first error: 'dimnames' applied to non-array

Calls: sourceWithProgress ... clusterApply -> staticClusterApply -> checkForRemoteErrors

Execution halted

please help

[Karl Broman]

I don't think I've seen this problem before. Can you share your data?

What version of R and R/qtl are you using, and what operating system?

karl

[nata...@gmail.com]

I'm using windows

Platform: x86_64-w64-mingw32/x64 (64-bit)

R version 4.0.2 (2020-06-22)

R/qtl v1.46-2

ב-יום שני, 15 במרץ 2021 בשעה 23:23:50 UTC+2, kbr...@gmail.com כתב/ה:

[nata...@gmail.com]

147  individuals

3036  markers

14  phenotypes

 --Cross type: f2 

ב-יום שישי, 19 במרץ 2021 בשעה 10:56:28 UTC+2, nata...@gmail.com כתב/ה: