In the MQM Tutorial (2014), it says:
"The current implementation of R/qtl-MQM has the following limitations: (1) MQM is limited to experimental crosses F2, BC, and selfed RIL " We have been using MQM on BC1F5 using BC.gen=1 and F.gen=5. It seems to work really great, but seems to contradict the Tutorial. Are we doing something bad? Hoping that limitation got updated.