R/qtl2 version 0.28

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Karl Broman

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Oct 17, 2021, 8:21:51 PM10/17/21
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A new version of R/qtl2 (version 0.28) has been released on CRAN. Windows and Mac binaries will be available within a few days. The major changes are below; a complete list of changes is at https://github.com/rqtl/qtl2/blob/main/NEWS.md
  • The default colors for the Collaborative Cross (CC) have been changed to a color-blind friendly palette. The original CC colors remain as CCorigcolors; the previous default is now CCaltcolors.
  • plot_coefCC() was revised to include col=CCcolors as an argument. The default is the new color-blind friendly CC colors, but one can now more easily use col=CCaltcolors or col=CCorigcolors to get a different choice.
  • Added plot_sdp() to plot the strain distribution patterns of SNPs using tracks of tick-marks for each founder strain.
  • Added arguments sdp_panel and strain_labels to plot_snpasso() so that you can include the plot_sdp() panel with the SNP association results and/or the genes.
Karl Broman

Karl Broman

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Oct 25, 2021, 11:14:04 AM10/25/21
to R/qtl announcements
The updated R/qtl2 package seems to need the latest version of the Rcpp package (1.0.7).

You can update both with the following:

    update.packages(oldPkgs=c("qtl2", "Rcpp"))

karl
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