A new version of R/qtl (1.36-6) has been released at its web site
There are no major changes, but there were a number of small things,
including:
Added a function flip.order() for flipping the order of markers on
selected chromosomes.
Added scanonevar.meanperm and scanonevar.varperm (from Robert Corty)
for permutation tests with scanonevar().
Revised plotPheno (aka plot.pheno) so that one can control the
x-axis label and title (also, in a histogram, the breaks).
Fixed a bug in scanonevar; was failing with an error about coercing
class "A" to a data.frame.
Karl Broman