Problem due to fastAI library in using PyInstaller
Sanjay Gupta
I am facing an issue while using PyInstaller to create an executable from Python script/application.
Version of Python running in a Virtual Environment Python 3.12.3
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///////////////Outcome of Execution////////////////////
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(PipelineRun) :~/Desktop/PipelineRun/IRDM_Rail_Inspection_Pipeline_June2024/Code/dist$ ./PipelineRun
Traceback (most recent call last):
File "PipelineRun.py", line 12, in <module>
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
File "PyInstaller/loader/pyimod02_importers.py", line 384, in exec_module
File "modules/fastai_foreground/DetectForeground.py", line 3, in <module>
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
File "PyInstaller/loader/pyimod02_importers.py", line 384, in exec_module
File "Utils/fastai_patch_inference/FastaiPatchInference.py", line 1, in <module>
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
File "PyInstaller/loader/pyimod02_importers.py", line 384, in exec_module
File "fastai/vision/__init__.py", line 1, in <module>
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
File "PyInstaller/loader/pyimod02_importers.py", line 384, in exec_module
File "fastai/basics.py", line 1, in <module>
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
File "PyInstaller/loader/pyimod02_importers.py", line 384, in exec_module
File "fastai/basic_train.py", line 2, in <module>
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
File "PyInstaller/loader/pyimod02_importers.py", line 384, in exec_module
File "fastai/torch_core.py", line 2, in <module>
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
File "PyInstaller/loader/pyimod02_importers.py", line 384, in exec_module
File "fastai/imports/__init__.py", line 1, in <module>
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
File "PyInstaller/loader/pyimod02_importers.py", line 384, in exec_module
File "fastai/imports/core.py", line 30, in <module>
File "pkg_resources/__init__.py", line 926, in require
File "pkg_resources/__init__.py", line 787, in resolve
File "pkg_resources/__init__.py", line 828, in _resolve_dist
pkg_resources.DistributionNotFound: The 'fastprogress>=0.2.1' distribution was not found and is required by the application
[PYI-30566:ERROR] Failed to execute script 'PipelineRun' due to unhandled exception!
(PipelineRun) :~/Desktop/PipelineRun/IRDM_Rail_Inspection_Pipeline_June2024/Code/dist$ pip install --upgrade pyinstaller
Requirement already satisfied: pyinstaller in /home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages (6.11.0)
Collecting pyinstaller
Downloading pyinstaller-6.11.1-py3-none-manylinux2014_x86_64.whl.metadata (8.3 kB)
Requirement already satisfied: setuptools>=42.0.0 in /home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages (from pyinstaller) (70.0.0)
Requirement already satisfied: altgraph in /home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages (from pyinstaller) (0.17.4)
Collecting pyinstaller-hooks-contrib>=2024.9 (from pyinstaller)
Downloading pyinstaller_hooks_contrib-2024.10-py3-none-any.whl.metadata (16 kB)
Requirement already satisfied: packaging>=22.0 in /home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages (from pyinstaller) (24.0)
Downloading pyinstaller-6.11.1-py3-none-manylinux2014_x86_64.whl (710 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 710.1/710.1 kB 8.7 MB/s eta 0:00:00
Downloading pyinstaller_hooks_contrib-2024.10-py3-none-any.whl (338 kB)
Installing collected packages: pyinstaller-hooks-contrib, pyinstaller
Attempting uninstall: pyinstaller-hooks-contrib
Found existing installation: pyinstaller-hooks-contrib 2024.8
Uninstalling pyinstaller-hooks-contrib-2024.8:
Successfully uninstalled pyinstaller-hooks-contrib-2024.8
Attempting uninstall: pyinstaller
Found existing installation: pyinstaller 6.11.0
Uninstalling pyinstaller-6.11.0:
Successfully uninstalled pyinstaller-6.11.0
Successfully installed pyinstaller-6.11.1 pyinstaller-hooks-contrib-2024.10
[notice] A new release of pip is available: 24.2 -> 24.3.1
[notice] To update, run: pip install --upgrade pip
(PipelineRun) :~/Desktop/PipelineRun/IRDM_Rail_Inspection_Pipeline_June2024/Code/dist$ cd ..
(PipelineRun) :~/.local/share/Trash/files$ cd -
bash: cd: /home/consultant/Desktop/PipelineRun/IRDM_Rail_Inspection_Pipeline_June2024/Code/dist: No such file or directory
(PipelineRun) :~/.local/share/Trash/files$ cd ~/Desktop/PipelineRun/IRDM_Rail_Inspection_Pipeline_June2024/Code
(PipelineRun) :~/Desktop/PipelineRun/IRDM_Rail_Inspection_Pipeline_June2024/Code$ pyinstaller --hidden-import=fastprogress --onefile PipelineRun.py
202 INFO: PyInstaller: 6.11.1, contrib hooks: 2024.10
203 INFO: Python: 3.12.3
205 INFO: Platform: Linux-6.8.0-36-generic-x86_64-with-glibc2.39
205 INFO: Python environment: /home/consultant/Desktop/PipelineRun
206 INFO: wrote /home/consultant/Desktop/PipelineRun/IRDM_Rail_Inspection_Pipeline_June2024/Code/PipelineRun.spec
209 INFO: Module search paths (PYTHONPATH):
['/usr/lib/python312.zip',
'/usr/lib/python3.12',
'/usr/lib/python3.12/lib-dynload',
'/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages',
'/home/consultant/Desktop/PipelineRun/IRDM_Rail_Inspection_Pipeline_June2024/Code']
837 INFO: checking Analysis
837 INFO: Building Analysis because Analysis-00.toc is non existent
837 INFO: Running Analysis Analysis-00.toc
837 INFO: Target bytecode optimization level: 0
837 INFO: Initializing module dependency graph...
839 INFO: Initializing module graph hook caches...
852 INFO: Analyzing base_library.zip ...
2469 INFO: Processing standard module hook 'hook-encodings.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
4834 INFO: Processing standard module hook 'hook-pickle.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
6250 INFO: Processing standard module hook 'hook-heapq.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
6806 INFO: Caching module dependency graph...
6923 INFO: Looking for Python shared library...
6947 INFO: Using Python shared library: /lib/x86_64-linux-gnu/libpython3.12.so.1.0
6947 INFO: Analyzing /home/consultant/Desktop/PipelineRun/IRDM_Rail_Inspection_Pipeline_June2024/Code/PipelineRun.py
6974 INFO: Processing standard module hook 'hook-cv2.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/_pyinstaller_hooks_contrib/stdhooks'
7593 INFO: Processing standard module hook 'hook-numpy.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
8805 INFO: Processing standard module hook 'hook-platform.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
9189 INFO: Processing standard module hook 'hook-sysconfig.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
10671 INFO: Processing standard module hook 'hook-difflib.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
10961 INFO: Processing standard module hook 'hook-multiprocessing.util.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
11096 INFO: Processing standard module hook 'hook-xml.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
12366 INFO: Processing standard module hook 'hook-psutil.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/_pyinstaller_hooks_contrib/stdhooks'
13917 INFO: Processing standard module hook 'hook-charset_normalizer.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/_pyinstaller_hooks_contrib/stdhooks'
14542 INFO: Processing standard module hook 'hook-torch.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/_pyinstaller_hooks_contrib/stdhooks'
2217 WARNING: Failed to collect submodules for 'torch.utils.tensorboard' because importing 'torch.utils.tensorboard' raised: ModuleNotFoundError: No module named 'tensorboard'
/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/torch/distributed/pipeline/__init__.py:2: UserWarning: torch.distributed.pipeline is deprecated. For up-to-date pipeline parallel implementation, please refer to the PiPPy library under the PyTorch organization (Pipeline Parallelism for PyTorch): https://github.com/pytorch/PiPPy
warnings.warn(
/usr/lib/python3.12/tempfile.py:1075: ResourceWarning: Implicitly cleaning up <TemporaryDirectory '/tmp/tmpnn_3cx5p'>
_warnings.warn(warn_message, ResourceWarning)
23999 INFO: hook-torch: inferred hidden imports for CUDA libraries: ['nvidia.cuda_nvrtc', 'nvidia.cuda_runtime', 'nvidia.cuda_cupti', 'nvidia.cudnn', 'nvidia.cublas', 'nvidia.cufft', 'nvidia.curand', 'nvidia.cusolver', 'nvidia.cusparse', 'nvidia.nccl', 'nvidia.nvtx']
24001 INFO: hook-torch: raising recursion limit to 5000
24535 INFO: Processing pre-safe-import-module hook 'hook-typing_extensions.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks/pre_safe_import_module'
24536 INFO: SetuptoolsInfo: initializing cached setuptools info...
25071 INFO: Processing standard module hook 'hook-sympy.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/_pyinstaller_hooks_contrib/stdhooks'
26735 INFO: Processing standard module hook 'hook-matplotlib.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
27115 INFO: Processing pre-safe-import-module hook 'hook-packaging.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks/pre_safe_import_module'
27137 INFO: Processing standard module hook 'hook-packaging.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
27254 INFO: Processing pre-safe-import-module hook 'hook-gi.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks/pre_safe_import_module'
27334 INFO: Processing standard module hook 'hook-gi.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
27427 INFO: Processing pre-safe-import-module hook 'hook-gi.repository.GLib.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks/pre_safe_import_module'
27428 INFO: Processing standard module hook 'hook-gi.repository.GLib.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
27574 INFO: Processing standard module hook 'hook-PIL.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
27733 INFO: Processing standard module hook 'hook-PIL.Image.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
28488 INFO: Processing standard module hook 'hook-pycparser.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/_pyinstaller_hooks_contrib/stdhooks'
29089 INFO: Processing standard module hook 'hook-setuptools.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
29099 INFO: Processing pre-safe-import-module hook 'hook-distutils.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks/pre_safe_import_module'
29572 INFO: Processing pre-safe-import-module hook 'hook-importlib_metadata.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks/pre_safe_import_module'
30632 INFO: Processing standard module hook 'hook-pkg_resources.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
33421 INFO: Processing standard module hook 'hook-PIL.ImageFilter.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
35058 INFO: Processing standard module hook 'hook-matplotlib.pyplot.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
35127 INFO: Processing pre-safe-import-module hook 'hook-six.moves.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks/pre_safe_import_module'
36361 INFO: Processing standard module hook 'hook-matplotlib.backend_bases.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
39027 INFO: Processing standard module hook 'hook-matplotlib.backends.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
39287 INFO: Processing pre-safe-import-module hook 'hook-importlib_resources.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks/pre_safe_import_module'
39362 INFO: Processing standard module hook 'hook-certifi.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/_pyinstaller_hooks_contrib/stdhooks'
52326 INFO: Processing standard module hook 'hook-scipy.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
53232 INFO: Processing standard module hook 'hook-scipy.linalg.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
54467 INFO: Processing standard module hook 'hook-scipy.sparse.csgraph.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
54572 INFO: Processing standard module hook 'hook-scipy.special._ufuncs.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
54710 INFO: Processing standard module hook 'hook-scipy.special._ellip_harm_2.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
57534 INFO: Processing standard module hook 'hook-scipy.spatial.transform.rotation.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
58860 INFO: Processing standard module hook 'hook-scipy.stats._stats.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
65787 INFO: Processing standard module hook 'hook-xml.dom.domreg.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
68471 INFO: Processing standard module hook 'hook-triton.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/_pyinstaller_hooks_contrib/stdhooks'
68838 WARNING: collect_data_files - skipping data collection for module 'triton.third_party.cuda' as it is not a package.
69823 INFO: Processing standard module hook 'hook-pandas.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
A module that was compiled using NumPy 1.x cannot be run in
NumPy 2.0.0 as it may crash. To support both 1.x and 2.x
versions of NumPy, modules must be compiled with NumPy 2.0.
Some module may need to rebuild instead e.g. with 'pybind11>=2.12'.
If you are a user of the module, the easiest solution will be to
downgrade to 'numpy<2' or try to upgrade the affected module.
We expect that some modules will need time to support NumPy 2.
Traceback (most recent call last): File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/isolated/_child.py", line 100, in <module>
while run_next_command(read_fh, write_fh):
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/isolated/_child.py", line 63, in run_next_command
output = function(*args, **kwargs)
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/utils/hooks/__init__.py", line 487, in _is_package
spec = importlib.util.find_spec(module_name)
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/__init__.py", line 49, in <module>
from pandas.core.api import (
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/api.py", line 28, in <module>
from pandas.core.arrays import Categorical
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/arrays/__init__.py", line 1, in <module>
from pandas.core.arrays.arrow import ArrowExtensionArray
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/arrays/arrow/__init__.py", line 5, in <module>
from pandas.core.arrays.arrow.array import ArrowExtensionArray
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/arrays/arrow/array.py", line 64, in <module>
from pandas.core.arrays.masked import BaseMaskedArray
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/arrays/masked.py", line 60, in <module>
from pandas.core import (
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/nanops.py", line 52, in <module>
bn = import_optional_dependency("bottleneck", errors="warn")
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/compat/_optional.py", line 135, in import_optional_dependency
module = importlib.import_module(name)
File "/usr/lib/python3.12/importlib/__init__.py", line 90, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/bottleneck/__init__.py", line 7, in <module>
from .move import (move_argmax, move_argmin, move_max, move_mean, move_median,
Traceback (most recent call last):
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__
raise ImportError(msg)
ImportError:
A module that was compiled using NumPy 1.x cannot be run in
NumPy 2.0.0 as it may crash. To support both 1.x and 2.x
versions of NumPy, modules must be compiled with NumPy 2.0.
Some module may need to rebuild instead e.g. with 'pybind11>=2.12'.
If you are a user of the module, the easiest solution will be to
downgrade to 'numpy<2' or try to upgrade the affected module.
We expect that some modules will need time to support NumPy 2.
343 INFO: NumExpr defaulting to 8 threads.
A module that was compiled using NumPy 1.x cannot be run in
NumPy 2.0.0 as it may crash. To support both 1.x and 2.x
versions of NumPy, modules must be compiled with NumPy 2.0.
Some module may need to rebuild instead e.g. with 'pybind11>=2.12'.
If you are a user of the module, the easiest solution will be to
downgrade to 'numpy<2' or try to upgrade the affected module.
We expect that some modules will need time to support NumPy 2.
Traceback (most recent call last): File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/isolated/_child.py", line 100, in <module>
while run_next_command(read_fh, write_fh):
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/isolated/_child.py", line 63, in run_next_command
output = function(*args, **kwargs)
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/utils/hooks/__init__.py", line 666, in _collect_submodules
__import__(name)
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/__init__.py", line 49, in <module>
from pandas.core.api import (
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/api.py", line 28, in <module>
from pandas.core.arrays import Categorical
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/arrays/__init__.py", line 1, in <module>
from pandas.core.arrays.arrow import ArrowExtensionArray
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/arrays/arrow/__init__.py", line 5, in <module>
from pandas.core.arrays.arrow.array import ArrowExtensionArray
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/arrays/arrow/array.py", line 64, in <module>
from pandas.core.arrays.masked import BaseMaskedArray
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/arrays/masked.py", line 60, in <module>
from pandas.core import (
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/nanops.py", line 52, in <module>
bn = import_optional_dependency("bottleneck", errors="warn")
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/compat/_optional.py", line 135, in import_optional_dependency
module = importlib.import_module(name)
File "/usr/lib/python3.12/importlib/__init__.py", line 90, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/bottleneck/__init__.py", line 7, in <module>
from .move import (move_argmax, move_argmin, move_max, move_mean, move_median,
Traceback (most recent call last):
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__
raise ImportError(msg)
ImportError:
A module that was compiled using NumPy 1.x cannot be run in
NumPy 2.0.0 as it may crash. To support both 1.x and 2.x
versions of NumPy, modules must be compiled with NumPy 2.0.
Some module may need to rebuild instead e.g. with 'pybind11>=2.12'.
If you are a user of the module, the easiest solution will be to
downgrade to 'numpy<2' or try to upgrade the affected module.
We expect that some modules will need time to support NumPy 2.
71718 INFO: Processing standard module hook 'hook-pytz.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
75017 INFO: Processing standard module hook 'hook-pandas.io.formats.style.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
A module that was compiled using NumPy 1.x cannot be run in
NumPy 2.0.0 as it may crash. To support both 1.x and 2.x
versions of NumPy, modules must be compiled with NumPy 2.0.
Some module may need to rebuild instead e.g. with 'pybind11>=2.12'.
If you are a user of the module, the easiest solution will be to
downgrade to 'numpy<2' or try to upgrade the affected module.
We expect that some modules will need time to support NumPy 2.
Traceback (most recent call last): File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/isolated/_child.py", line 100, in <module>
while run_next_command(read_fh, write_fh):
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/isolated/_child.py", line 63, in run_next_command
output = function(*args, **kwargs)
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/utils/hooks/__init__.py", line 487, in _is_package
spec = importlib.util.find_spec(module_name)
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/__init__.py", line 49, in <module>
from pandas.core.api import (
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/api.py", line 28, in <module>
from pandas.core.arrays import Categorical
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/arrays/__init__.py", line 1, in <module>
from pandas.core.arrays.arrow import ArrowExtensionArray
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/arrays/arrow/__init__.py", line 5, in <module>
from pandas.core.arrays.arrow.array import ArrowExtensionArray
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/arrays/arrow/array.py", line 64, in <module>
from pandas.core.arrays.masked import BaseMaskedArray
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/arrays/masked.py", line 60, in <module>
from pandas.core import (
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/nanops.py", line 52, in <module>
bn = import_optional_dependency("bottleneck", errors="warn")
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/compat/_optional.py", line 135, in import_optional_dependency
module = importlib.import_module(name)
File "/usr/lib/python3.12/importlib/__init__.py", line 90, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/bottleneck/__init__.py", line 7, in <module>
from .move import (move_argmax, move_argmin, move_max, move_mean, move_median,
Traceback (most recent call last):
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__
raise ImportError(msg)
ImportError:
A module that was compiled using NumPy 1.x cannot be run in
NumPy 2.0.0 as it may crash. To support both 1.x and 2.x
versions of NumPy, modules must be compiled with NumPy 2.0.
Some module may need to rebuild instead e.g. with 'pybind11>=2.12'.
If you are a user of the module, the easiest solution will be to
downgrade to 'numpy<2' or try to upgrade the affected module.
We expect that some modules will need time to support NumPy 2.
A module that was compiled using NumPy 1.x cannot be run in
NumPy 2.0.0 as it may crash. To support both 1.x and 2.x
versions of NumPy, modules must be compiled with NumPy 2.0.
Some module may need to rebuild instead e.g. with 'pybind11>=2.12'.
If you are a user of the module, the easiest solution will be to
downgrade to 'numpy<2' or try to upgrade the affected module.
We expect that some modules will need time to support NumPy 2.
Traceback (most recent call last): File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/isolated/_child.py", line 100, in <module>
while run_next_command(read_fh, write_fh):
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/isolated/_child.py", line 63, in run_next_command
output = function(*args, **kwargs)
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/utils/hooks/__init__.py", line 516, in _get_package_paths
spec = importlib.util.find_spec(package)
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/__init__.py", line 49, in <module>
from pandas.core.api import (
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/api.py", line 28, in <module>
from pandas.core.arrays import Categorical
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/arrays/__init__.py", line 1, in <module>
from pandas.core.arrays.arrow import ArrowExtensionArray
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/arrays/arrow/__init__.py", line 5, in <module>
from pandas.core.arrays.arrow.array import ArrowExtensionArray
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/arrays/arrow/array.py", line 64, in <module>
from pandas.core.arrays.masked import BaseMaskedArray
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/arrays/masked.py", line 60, in <module>
from pandas.core import (
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/core/nanops.py", line 52, in <module>
bn = import_optional_dependency("bottleneck", errors="warn")
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/pandas/compat/_optional.py", line 135, in import_optional_dependency
module = importlib.import_module(name)
File "/usr/lib/python3.12/importlib/__init__.py", line 90, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/bottleneck/__init__.py", line 7, in <module>
from .move import (move_argmax, move_argmin, move_max, move_mean, move_median,
Traceback (most recent call last):
File "/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__
raise ImportError(msg)
ImportError:
A module that was compiled using NumPy 1.x cannot be run in
NumPy 2.0.0 as it may crash. To support both 1.x and 2.x
versions of NumPy, modules must be compiled with NumPy 2.0.
Some module may need to rebuild instead e.g. with 'pybind11>=2.12'.
If you are a user of the module, the easiest solution will be to
downgrade to 'numpy<2' or try to upgrade the affected module.
We expect that some modules will need time to support NumPy 2.
77070 INFO: Processing standard module hook 'hook-botocore.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/_pyinstaller_hooks_contrib/stdhooks'
79599 INFO: Processing standard module hook 'hook-pandas.plotting.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
81386 INFO: Processing standard module hook 'hook-sqlalchemy.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
88164 INFO: Processing standard module hook 'hook-sqlite3.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
88511 INFO: Processing standard module hook 'hook-pandas.io.clipboard.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks'
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127017 INFO: Processing standard module hook 'hook-skimage.exposure.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/_pyinstaller_hooks_contrib/stdhooks'
128181 INFO: Processing standard module hook 'hook-skimage.data.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/_pyinstaller_hooks_contrib/stdhooks'
129287 INFO: Processing standard module hook 'hook-sklearn.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/_pyinstaller_hooks_contrib/stdhooks'
129595 INFO: Processing standard module hook 'hook-sklearn.utils.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/_pyinstaller_hooks_contrib/stdhooks'
130675 INFO: Processing standard module hook 'hook-sklearn.metrics.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/_pyinstaller_hooks_contrib/stdhooks'
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133717 INFO: Processing standard module hook 'hook-sklearn.cluster.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/_pyinstaller_hooks_contrib/stdhooks'
133816 INFO: Processing standard module hook 'hook-sklearn.metrics.pairwise.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/_pyinstaller_hooks_contrib/stdhooks'
134375 INFO: Processing standard module hook 'hook-sklearn.neighbors.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/_pyinstaller_hooks_contrib/stdhooks'
134554 INFO: Processing standard module hook 'hook-sklearn.linear_model.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/_pyinstaller_hooks_contrib/stdhooks'
136188 INFO: Processing standard module hook 'hook-fastai.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/_pyinstaller_hooks_contrib/stdhooks'
136364 INFO: Processing pre-safe-import-module hook 'hook-urllib3.packages.six.moves.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/PyInstaller/hooks/pre_safe_import_module'
137589 INFO: Processing standard module hook 'hook-cryptography.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/_pyinstaller_hooks_contrib/stdhooks'
139100 INFO: Processing standard module hook 'hook-bcrypt.py' from '/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/_pyinstaller_hooks_contrib/stdhooks'
/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/fastai/gen_doc/gen_notebooks.py:63: SyntaxWarning: invalid escape sequence '\s'
match = re.match(f"^({key})\s*=\s*.*", codestr)
/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/fastai/gen_doc/gen_notebooks.py:216: SyntaxWarning: invalid escape sequence '\('
if re.search(f"update_nb_metadata\('{fn}'", c['source']): return c
/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/fastai/gen_doc/nbdoc.py:27: SyntaxWarning: invalid escape sequence '\*'
arg_prefixes = {inspect._VAR_POSITIONAL: '\*', inspect._VAR_KEYWORD:'\*\*'}
/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/fastai/gen_doc/nbdoc.py:27: SyntaxWarning: invalid escape sequence '\*'
arg_prefixes = {inspect._VAR_POSITIONAL: '\*', inspect._VAR_KEYWORD:'\*\*'}
/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/fastai/gen_doc/nbdoc.py:57: SyntaxWarning: invalid escape sequence '\['
return f'`Optional`\[{type_repr(args[0])}\]'
/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/fastai/gen_doc/nbdoc.py:57: SyntaxWarning: invalid escape sequence '\]'
return f'`Optional`\[{type_repr(args[0])}\]'
/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/fastai/gen_doc/nbdoc.py:59: SyntaxWarning: invalid escape sequence '\['
return f'{link_type(t)}\[{reprs}\]'
/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/fastai/gen_doc/nbdoc.py:59: SyntaxWarning: invalid escape sequence '\]'
return f'{link_type(t)}\[{reprs}\]'
/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/fastai/gen_doc/nbdoc.py:173: SyntaxWarning: invalid escape sequence '\['
BT_REGEX = re.compile("\[`([^`]*)`\](?:\([^)]*\))|`([^`]*)`") # matches [`key`](link) or `key`
/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/fastai/gen_doc/docstrings.py:26: SyntaxWarning: invalid escape sequence '\*'
NEW_REGEX = re.compile(f":(?P<field>{FIELDS}) (?P<name>[\*\w]+): (?P<doc>.*?)"
/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/fastai/gen_doc/docstrings.py:27: SyntaxWarning: invalid escape sequence '\Z'
f"(?:(?=:(?:{FIELDS}|return|raises))|\Z)", re.S)
/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/fastai/gen_doc/nbtest.py:111: SyntaxWarning: invalid escape sequence '\w'
exact_re = '' if exact_match else '\w*'
/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/fastai/gen_doc/nbtest.py:112: SyntaxWarning: invalid escape sequence '\w'
return re.match(f'test_{subdir}\w*{Path(fp).stem}{exact_re}\.py', file_name)
/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/fastai/gen_doc/nbtest.py:112: SyntaxWarning: invalid escape sequence '\.'
return re.match(f'test_{subdir}\w*{Path(fp).stem}{exact_re}\.py', file_name)
/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/fastai/gen_doc/nbtest.py:155: SyntaxWarning: invalid escape sequence '\s'
if re.match(f'.*[\s\.\(]{fn_name}[\.\(]', line):
/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/fastai/gen_doc/nbtest.py:155: SyntaxWarning: invalid escape sequence '\.'
if re.match(f'.*[\s\.\(]{fn_name}[\.\(]', line):
/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/fastai/gen_doc/nbtest.py:164: SyntaxWarning: invalid escape sequence '\s'
test_name = re.match(f'\s*def (test_\w*)', line_text).groups(0)[0]
/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/fastai/gen_doc/doctest.py:121: SyntaxWarning: invalid escape sequence '\s'
if re.match(f'\s*def test', l): return (lineno - idx), l # 1 based index for github
/home/consultant/Desktop/PipelineRun/lib/python3.12/site-packages/fastai/gen_doc/doctest.py:122: SyntaxWarning: invalid escape sequence '\w'
if re.match(f'\w+', l): break # top level indent - out of function scope
140158 INFO: Processing module hooks (post-graph stage)...
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160824 INFO: Matplotlib backend selection method: automatic discovery of used backends
160876 INFO: Discovered Matplotlib backend(s) via `matplotlib.use()` call in module 'sympy.testing.runtests': ['Agg', 'Agg']
161008 INFO: The following Matplotlib backends were discovered by scanning for `matplotlib.use()` calls: ['Agg']. If your backend of choice is not in this list, either add a `matplotlib.use()` call to your code, or configure the backend collection via hook options (see: https://pyinstaller.org/en/stable/hooks-config.html#matplotlib-hooks).
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1133529 INFO: Building EXE because EXE-00.toc is non existent
1133529 INFO: Building EXE from EXE-00.toc
1133529 INFO: Copying bootloader EXE to /home/consultant/Desktop/PipelineRun/IRDM_Rail_Inspection_Pipeline_June2024/Code/dist/PipelineRun
1133529 INFO: Appending PKG archive to custom ELF section in EXE
1148888 INFO: Building EXE from EXE-00.toc completed successfully.
(PipelineRun) :~/Desktop/PipelineRun/IRDM_Rail_Inspection_Pipeline_June2024/Code$ ls
build log_file_annomoly.csv PipelineRun.py __pycache__ temp.jpg
dist modules PipelineRun.spec retinanet Utils
(PipelineRun) :~/Desktop/PipelineRun/IRDM_Rail_Inspection_Pipeline_June2024/Code$ ./dist/PipelineRun
Traceback (most recent call last):
File "PipelineRun.py", line 12, in <module>
from modules.fastai_foreground import DetectForeground
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
File "PyInstaller/loader/pyimod02_importers.py", line 384, in exec_module
File "modules/fastai_foreground/DetectForeground.py", line 3, in <module>
from Utils.fastai_patch_inference import FastaiPatchInference
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
File "PyInstaller/loader/pyimod02_importers.py", line 384, in exec_module
File "Utils/fastai_patch_inference/FastaiPatchInference.py", line 1, in <module>
from fastai.vision import *
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
File "PyInstaller/loader/pyimod02_importers.py", line 384, in exec_module
File "fastai/vision/__init__.py", line 1, in <module>
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
File "PyInstaller/loader/pyimod02_importers.py", line 384, in exec_module
File "fastai/basics.py", line 1, in <module>
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
File "PyInstaller/loader/pyimod02_importers.py", line 384, in exec_module
File "fastai/basic_train.py", line 2, in <module>
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
File "PyInstaller/loader/pyimod02_importers.py", line 384, in exec_module
File "fastai/torch_core.py", line 2, in <module>
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
File "PyInstaller/loader/pyimod02_importers.py", line 384, in exec_module
File "fastai/imports/__init__.py", line 1, in <module>
File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
File "PyInstaller/loader/pyimod02_importers.py", line 384, in exec_module
File "fastai/imports/core.py", line 30, in <module>
File "pkg_resources/__init__.py", line 926, in require
File "pkg_resources/__init__.py", line 787, in resolve
File "pkg_resources/__init__.py", line 828, in _resolve_dist
pkg_resources.DistributionNotFound: The 'fastprogress>=0.2.1' distribution was not found and is required by the application
[PYI-36936:ERROR] Failed to execute script 'PipelineRun' due to unhandled exception!
(PipelineRun) ~/Desktop/PipelineRun/IRDM_Rail_Inspection_Pipeline_June2024/Code$