- Phillip Lord: An
evolutionary approach to function.
- Clement Jonquet,
Mark A. Musen and Nigam H. Shah: Building a Biomedical Ontology
Recommender Web Service.
- The OBI Consortium: Modeling
biomedical experimental processes with OBI.
- David Shotton: CiTO,
the Citation Typing Ontology, and its use for annotation of reference
lists and visualization of citation networks.
- Allyson Lister,
Phillip Lord, Matthew Pocock and Anil Wipat: Annotation of SBML
Models Through Rule-Based Semantic Integration.
- Jose Cruz-Toledo,
Michel Dumontier, Marc Parisien and Francois Major: RKB: A Semantic
Web Knowledge Base for RNA.
- Matthias Samwald and
Holger Stenzhorn: Simple, Ontology-Based Representation of
Biomedical Statements through Fine-Granular Entity Tagging and New Web
Standards.
URL: coming soon ...
*** Introduction
Bio-Ontologies:
Knowledge in Biology provides a forum for discussion of the latest and
most cutting-edge research in ontologies and more generally the
organisation, presentation and dissemination of knowledge in biology
and life sciences. It has existed as a SIG at ISMB (
http://www.iscb.org/ismb2010) for 12 years.
We are interested in
approachs to organising, presenting and disseminating
knowledge in life
sciences.
We invite papers and
poster submissions in traditional areas, such as the biological and
medical applications of ontologies, newly developed biomedical
ontologies, and the use of ontologies in data sharing standards. In
addition, We invite submissions on a wide range of topics including,
but not limited to:
- Semantic and/or
Scientific Wikis.
- Collaborative
curation platforms
- Collaborative
ontology authoring and peer-review mechanisms
- Automated ontology
learning
- Ontology design
patterns and guidelines
- Ontology evaluation
- Mapping between
ontologies
- Biological and
medical applications of ontologies
- "Flash updates" on
newly developed or existing ontologies
- Use of ontologies
in data standards
- Semantic Web
enabled applications (such as for enhanced publishing and for capturing
scientific discourse)
- Research in
ontology languages and its effect on biomedical ontologies
*** Instructions to
Authors
We are inviting three
types of submissions.
- Short papers, up
to 4 pages.
- Poster abstracts,
up to 1 page.
- Flash updates, up
to 1 page
Following review,
successful papers will be presented at the meeting. Posters will be
exhibited
during the 2 days for
at least one poster session. Flash updates are for short talks (5 min)
giving the salient
new developments on existing public ontologies (e.g. the Foundational
Model of Anatomy).
Posters authors can
also indicate a desire to provide a flash update.
Unsuccessful papers
will automatically be considered for poster presentation;
there is no need to
submit both on the same topic.
*** Submissions
Submissions are now
open and can be submitted through easychair
** Programme
The SIG will run for
two days this year.
On each day, the morning session will have an invited keynote and
selected papers; while the afternoon session will have a panel session
and selected talks. One of the talks session will have "flash updates"
from groups developing bio-ontologies as part of large international,
collaborative consortia and from selected poster presenters.
09:00-10:00
Keynote
10:00-12:00
Research Talks (with coffee break)
12:00-13:30
Lunch and Poster Session
13:30-16:00
Research Talks (with coffee break)
16:00-17:30
Panel Session
17:30-close
and Poster Session
This year's keynote speakers will by Andrew Rzhetsky (July
10th) and Tim Clark (July 9th)
*** Organisers
Nigam Shah, Stanford
University
Larisa Soldatova,
University of Wales, Aberystwyth
Susanna-Assunta
Sansone, EBI
Susie Stephens,
Johnson & Johnson
*** Templates
Submission templates
are available from the website
*** Programme
Committee