Using unimod files for modifications

[Ry Tweedie-Cullen]

Hi there,
How do you go about using unimod files allow conversion of pepXML
files that contain modifications not contained in the IPP's default
list? You mention this as a feature but I'm not sure whether it does
this automatically or whether you have to manually provide it with a
file?

Thanks

Ry

[Brian Pratt]

Have a look at c:\inetpub\ipp-bin\residue_modifications.cfg for details. You can either put the modifications in that file
directly, or use that file to point to your modifications (as in a Mascot installation etc).

Thanks for using IPP!

Brian Pratt
www.insilicos.com/IPP.html

[Jonathan Xu]

Hi Brian,

We met at the 5th HUPO conference. We talked about send you some of my SILAC
data. You asked me to send you the data via internet. Could you please send
me the link? Thanks.

Jonathan Xu

[Bryan Prazen]

Jonathan,

It was nice to finally meet you in person.  Yes, please send some example data and an explanation of your experiment.  I will send you a .pdf document explaining how to use our FTP server off list. 

Bryan Prazen
www.insilicos.com