New Version of GotCloud (1.17) available

[GotCloud]

A new release of gotcloud, 1.17, is now available.  

Reminder, there is also a wiki page that describes the changes in each version:

http://genome.sph.umich.edu/wiki/GotCloud:_Versions

I have copied below the information on changes for this version.

There is also a wiki page with FAQ:

http://genome.sph.umich.edu/wiki/GotCloud:_FAQs

I am continually updating GotCloud based on User Suggestions.  So if you notice something, let me know and I will try to get it fixed.

The updates in this version are described below.

Please let me know if you have any questions.

The new version can be downloaded from: https://github.com/statgen/gotcloud/releases/tag/gotcloud.1.17

The latest development version is always available at: https://github.com/statgen/gotcloud

Mary Kate Wing

General

• Add ability to run custom pipelines
• Fix bug in libVcfVcfFile.cpp
• Fix some compatibility issues for CentOS5

Aligner

• Add pipelines to run just recab & QC, and just QC.
• VerifyBamID
  • Exclude ChrX & Y