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Welcome to Genomes on the Cloud (GotCloud) google group!
Please visit
http://genome.sph.umich.
edu/wiki/GotCloud
for detailed information on using the GotCloud pipelines.
Please join the group and ask further questions on GotCloud.
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Fred Zhou
, …
O E-G
9
7/23/19
Is there any sample size limit for the GlfMultiples/GlfFlex when doing the joint calling?
Thanks for the prompt response, much appreciated. Best, On Tuesday, 23 July 2019 17:30:57 UTC-4, Hyun
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Is there any sample size limit for the GlfMultiples/GlfFlex when doing the joint calling?
Thanks for the prompt response, much appreciated. Best, On Tuesday, 23 July 2019 17:30:57 UTC-4, Hyun
7/23/19
Bren K
1/24/19
vcfPileup std::runtime_error
Hi, I got the below error when running to VcfPileup with on my VCF. It has worked for other samples
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vcfPileup std::runtime_error
Hi, I got the below error when running to VcfPileup with on my VCF. It has worked for other samples
1/24/19
Jonathan Mitchell
, …
Hyun Min Kang
3
3/26/18
hard filtered variants in split directory pass file
Hard filter is provides preliminary filtering results that will be used for SVM filtering, and SVM
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hard filtered variants in split directory pass file
Hard filter is provides preliminary filtering results that will be used for SVM filtering, and SVM
3/26/18
ma34...@gmail.com
,
pj...@umich.edu
3
3/24/17
Error compiling GotCloud
How are you installing gotcloud? I was doing as you are suggesting: git clone https://github.com/
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Error compiling GotCloud
How are you installing gotcloud? I was doing as you are suggesting: git clone https://github.com/
3/24/17
이동혁
,
Hyun Min Kang
2
2/16/17
What kind of Algorithms or method used in GotCloud INDEL calling ?
Indel calling algorithm is not described in the paper. Thanks, Hyun. On Sun, Feb 5, 2017 at 7:07 AM
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What kind of Algorithms or method used in GotCloud INDEL calling ?
Indel calling algorithm is not described in the paper. Thanks, Hyun. On Sun, Feb 5, 2017 at 7:07 AM
2/16/17
Andreas Wilm
,
Hyun Min Kang
5
2/15/16
Multi-sample variant calling: simultaneous read access to all BAM files required?
Thanks again On 16 February 2016 at 11:24, Hyun Min Kang <hmk...@umich.edu> wrote: > We do
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Multi-sample variant calling: simultaneous read access to all BAM files required?
Thanks again On 16 February 2016 at 11:24, Hyun Min Kang <hmk...@umich.edu> wrote: > We do
2/15/16
David Kainer
,
Mary Kate Wing
5
2/6/16
GotCloud for non-Human variant calling
For ldrefine - we run Beagle, then Thunder. I've added Hyun to the email as he is more familiar
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GotCloud for non-Human variant calling
For ldrefine - we run Beagle, then Thunder. I've added Hyun to the email as he is more familiar
2/6/16
GotCloud
5/14/15
Announcement
New Version of GotCloud (1.17) available
A new release of gotcloud, 1.17, is now available. Reminder, there is also a wiki page that describes
unread,
Announcement
New Version of GotCloud (1.17) available
A new release of gotcloud, 1.17, is now available. Reminder, there is also a wiki page that describes
5/14/15
GotCloud
2/26/15
Announcement
New Version of GotCloud (1.16) is now available
A new release of gotcloud, 1.16, is now available. Reminder, there is also a wiki page that describes
unread,
Announcement
New Version of GotCloud (1.16) is now available
A new release of gotcloud, 1.16, is now available. Reminder, there is also a wiki page that describes
2/26/15
Mary Kate Wing
12/16/14
Announcement
New Version of GotCloud (1.15) is now available
A new release of gotcloud, 1.15, is now available. Reminder, there is also a wiki page that describes
unread,
Announcement
New Version of GotCloud (1.15) is now available
A new release of gotcloud, 1.15, is now available. Reminder, there is also a wiki page that describes
12/16/14
Mary Kate Wing
3
11/29/14
GotCloud 1.14.7
Another small update, version 1.14.9: Fix indel - there was an issue due to the recently updated
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GotCloud 1.14.7
Another small update, version 1.14.9: Fix indel - there was an issue due to the recently updated
11/29/14
GotCloud
8/29/14
Announcement
New Version of GotCloud (1.14) is now available
A new release of gotcloud, 1.14, is now available. Reminder, there is also a wiki page that describes
unread,
Announcement
New Version of GotCloud (1.14) is now available
A new release of gotcloud, 1.14, is now available. Reminder, there is also a wiki page that describes
8/29/14
Steve Cook
,
Mary Kate Wing
5
7/15/14
trouble running aligner with NA12878 chr1 fastq
I just wanted to follow up with the Google Group to let you know the resolution in case someone else
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trouble running aligner with NA12878 chr1 fastq
I just wanted to follow up with the Google Group to let you know the resolution in case someone else
7/15/14
GotCloud
7/15/14
Announcement
New Version of GotCloud (1.13) is now available
A new release of gotcloud, 1.13 is now available. Reminder, there is also a wiki page that describes
unread,
Announcement
New Version of GotCloud (1.13) is now available
A new release of gotcloud, 1.13 is now available. Reminder, there is also a wiki page that describes
7/15/14
GotCloud
1/17/14
Announcement
New Version of GotCloud (1.12) is now available
A new release of gotcloud, 1.12 is now available. Reminder, there is also a wiki page that describes
unread,
Announcement
New Version of GotCloud (1.12) is now available
A new release of gotcloud, 1.12 is now available. Reminder, there is also a wiki page that describes
1/17/14
Arang Rhie
, …
Mary Kate Wing
8
1/10/14
Some options that does not work to run in parallel
Great, I'm glad that --numcs worked for you as you needed. BWA_THREADS Did you run the test case
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Some options that does not work to run in parallel
Great, I'm glad that --numcs worked for you as you needed. BWA_THREADS Did you run the test case
1/10/14
jai
, …
Mary Kate Wing
8
11/7/13
System requirements
For the aligner, with slurm, mosix, and sun grid engine, a single sample in GotCloud will run on a
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System requirements
For the aligner, with slurm, mosix, and sun grid engine, a single sample in GotCloud will run on a
11/7/13
GotCloud
9/6/13
Announcement
New Version (1.11) is now available
A new version of gotcloud, 1.11 is now available. Reminder, there is also a wiki page that describes
unread,
Announcement
New Version (1.11) is now available
A new version of gotcloud, 1.11 is now available. Reminder, there is also a wiki page that describes
9/6/13
Dan Mazur
,
Mary Kate Wing
4
8/27/13
Installing GotCloud on CentOS5
Great, glad that it works now. Let me know if you need any help making use of gotCloud for your own
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Installing GotCloud on CentOS5
Great, glad that it works now. Let me know if you need any help making use of gotCloud for your own
8/27/13
GotCloud
7/31/13
Announcement
New Version (1.08) is now available
A new version of gotcloud, 1.08 is now available. Reminder, there is also a wiki page that describes
unread,
Announcement
New Version (1.08) is now available
A new version of gotcloud, 1.08 is now available. Reminder, there is also a wiki page that describes
7/31/13
Mary Kate Wing
7/19/13
WorkArounds for Bugs in Version 1.07
I have gotten a couple of emails from people who have encountered minor issues with the latest
unread,
WorkArounds for Bugs in Version 1.07
I have gotten a couple of emails from people who have encountered minor issues with the latest
7/19/13
GotCloud
7/3/13
Announcement
New Version (1.07) is now available
A new version of gotcloud, 1.07 is now available. Sorry for the delay in releasing a new version. I
unread,
Announcement
New Version (1.07) is now available
A new version of gotcloud, 1.07 is now available. Sorry for the delay in releasing a new version. I
7/3/13
GotCloud
4/19/13
Announcement
New Version (1.06) is now available
A new version of gotcloud, 1.06 is now available. I have also created a wiki page that describes the
unread,
Announcement
New Version (1.06) is now available
A new version of gotcloud, 1.06 is now available. I have also created a wiki page that describes the
4/19/13
GotCloud
,
Mary Kate Wing
2
3/25/13
Announcement
New Version of GotCloud Available
As a followup to my previous email, I forgot to mention a few things: This latest version is: 1.03a.
unread,
Announcement
New Version of GotCloud Available
As a followup to my previous email, I forgot to mention a few things: This latest version is: 1.03a.
3/25/13
GotCloud
3/8/13
Announcement
Welcome to the GotCloud Google Group!
Welcome to the GotCloud Google Group. This week we held our first tutorial on GotCloud at IBG
unread,
Announcement
Welcome to the GotCloud Google Group!
Welcome to the GotCloud Google Group. This week we held our first tutorial on GotCloud at IBG
3/8/13