GotCloud

Contact owners and managers

1–25 of 25

Welcome to Genomes on the Cloud (GotCloud) google group!

Please visit http://genome.sph.umich.edu/wiki/GotCloud for detailed information on using the GotCloud pipelines.

Please join the group and ask further questions on GotCloud.

0 selected

Fred Zhou, … O E-G9

7/23/19

Is there any sample size limit for the GlfMultiples/GlfFlex when doing the joint calling?

Thanks for the prompt response, much appreciated. Best, On Tuesday, 23 July 2019 17:30:57 UTC-4, Hyun

unread,

Is there any sample size limit for the GlfMultiples/GlfFlex when doing the joint calling?

Thanks for the prompt response, much appreciated. Best, On Tuesday, 23 July 2019 17:30:57 UTC-4, Hyun

7/23/19

Bren K

1/24/19

vcfPileup std::runtime_error

Hi, I got the below error when running to VcfPileup with on my VCF. It has worked for other samples

unread,

vcfPileup std::runtime_error

Hi, I got the below error when running to VcfPileup with on my VCF. It has worked for other samples

1/24/19

Jonathan Mitchell, … Hyun Min Kang3

3/26/18

hard filtered variants in split directory pass file

Hard filter is provides preliminary filtering results that will be used for SVM filtering, and SVM

unread,

hard filtered variants in split directory pass file

Hard filter is provides preliminary filtering results that will be used for SVM filtering, and SVM

3/26/18

ma34...@gmail.com, pj...@umich.edu3

3/24/17

Error compiling GotCloud

How are you installing gotcloud? I was doing as you are suggesting: git clone https://github.com/

unread,

Error compiling GotCloud

How are you installing gotcloud? I was doing as you are suggesting: git clone https://github.com/

3/24/17

이동혁, Hyun Min Kang2

2/16/17

What kind of Algorithms or method used in GotCloud INDEL calling ?

Indel calling algorithm is not described in the paper. Thanks, Hyun. On Sun, Feb 5, 2017 at 7:07 AM

unread,

What kind of Algorithms or method used in GotCloud INDEL calling ?

Indel calling algorithm is not described in the paper. Thanks, Hyun. On Sun, Feb 5, 2017 at 7:07 AM

2/16/17

Andreas Wilm, Hyun Min Kang5

2/15/16

Multi-sample variant calling: simultaneous read access to all BAM files required?

Thanks again On 16 February 2016 at 11:24, Hyun Min Kang <hmk...@umich.edu> wrote: > We do

unread,

Multi-sample variant calling: simultaneous read access to all BAM files required?

Thanks again On 16 February 2016 at 11:24, Hyun Min Kang <hmk...@umich.edu> wrote: > We do

2/15/16

David Kainer, Mary Kate Wing5

2/6/16

GotCloud for non-Human variant calling

For ldrefine - we run Beagle, then Thunder. I've added Hyun to the email as he is more familiar

unread,

GotCloud for non-Human variant calling

For ldrefine - we run Beagle, then Thunder. I've added Hyun to the email as he is more familiar

2/6/16

GotCloud

5/14/15

Announcement

New Version of GotCloud (1.17) available

A new release of gotcloud, 1.17, is now available. Reminder, there is also a wiki page that describes

unread,

Announcement

New Version of GotCloud (1.17) available

A new release of gotcloud, 1.17, is now available. Reminder, there is also a wiki page that describes

5/14/15

GotCloud

2/26/15

Announcement

New Version of GotCloud (1.16) is now available

A new release of gotcloud, 1.16, is now available. Reminder, there is also a wiki page that describes

unread,

Announcement

New Version of GotCloud (1.16) is now available

A new release of gotcloud, 1.16, is now available. Reminder, there is also a wiki page that describes

2/26/15

Mary Kate Wing

12/16/14

Announcement

New Version of GotCloud (1.15) is now available

A new release of gotcloud, 1.15, is now available. Reminder, there is also a wiki page that describes

unread,

Announcement

New Version of GotCloud (1.15) is now available

A new release of gotcloud, 1.15, is now available. Reminder, there is also a wiki page that describes

12/16/14

Mary Kate Wing3

11/29/14

GotCloud 1.14.7

Another small update, version 1.14.9: Fix indel - there was an issue due to the recently updated

unread,

GotCloud 1.14.7

Another small update, version 1.14.9: Fix indel - there was an issue due to the recently updated

11/29/14

GotCloud

8/29/14

Announcement

New Version of GotCloud (1.14) is now available

A new release of gotcloud, 1.14, is now available. Reminder, there is also a wiki page that describes

unread,

Announcement

New Version of GotCloud (1.14) is now available

A new release of gotcloud, 1.14, is now available. Reminder, there is also a wiki page that describes

8/29/14

Steve Cook, Mary Kate Wing5

7/15/14

trouble running aligner with NA12878 chr1 fastq

I just wanted to follow up with the Google Group to let you know the resolution in case someone else

unread,

trouble running aligner with NA12878 chr1 fastq

I just wanted to follow up with the Google Group to let you know the resolution in case someone else

7/15/14

GotCloud

7/15/14

Announcement

New Version of GotCloud (1.13) is now available

A new release of gotcloud, 1.13 is now available. Reminder, there is also a wiki page that describes

unread,

Announcement

New Version of GotCloud (1.13) is now available

A new release of gotcloud, 1.13 is now available. Reminder, there is also a wiki page that describes

7/15/14

GotCloud

1/17/14

Announcement

New Version of GotCloud (1.12) is now available

A new release of gotcloud, 1.12 is now available. Reminder, there is also a wiki page that describes

unread,

Announcement

New Version of GotCloud (1.12) is now available

A new release of gotcloud, 1.12 is now available. Reminder, there is also a wiki page that describes

1/17/14

Arang Rhie, … Mary Kate Wing8

1/10/14

Some options that does not work to run in parallel

Great, I'm glad that --numcs worked for you as you needed. BWA_THREADS Did you run the test case

unread,

Some options that does not work to run in parallel

Great, I'm glad that --numcs worked for you as you needed. BWA_THREADS Did you run the test case

1/10/14

jai, … Mary Kate Wing8

11/7/13

System requirements

For the aligner, with slurm, mosix, and sun grid engine, a single sample in GotCloud will run on a

unread,

System requirements

For the aligner, with slurm, mosix, and sun grid engine, a single sample in GotCloud will run on a

11/7/13

GotCloud

9/6/13

Announcement

New Version (1.11) is now available

A new version of gotcloud, 1.11 is now available. Reminder, there is also a wiki page that describes

unread,

Announcement

New Version (1.11) is now available

A new version of gotcloud, 1.11 is now available. Reminder, there is also a wiki page that describes

9/6/13

Dan Mazur, Mary Kate Wing4

8/27/13

Installing GotCloud on CentOS5

Great, glad that it works now. Let me know if you need any help making use of gotCloud for your own

unread,

Installing GotCloud on CentOS5

Great, glad that it works now. Let me know if you need any help making use of gotCloud for your own

8/27/13

GotCloud

7/31/13

Announcement

New Version (1.08) is now available

A new version of gotcloud, 1.08 is now available. Reminder, there is also a wiki page that describes

unread,

Announcement

New Version (1.08) is now available

A new version of gotcloud, 1.08 is now available. Reminder, there is also a wiki page that describes

7/31/13

Mary Kate Wing

7/19/13

WorkArounds for Bugs in Version 1.07

I have gotten a couple of emails from people who have encountered minor issues with the latest

unread,

WorkArounds for Bugs in Version 1.07

I have gotten a couple of emails from people who have encountered minor issues with the latest

7/19/13

GotCloud

7/3/13

Announcement

New Version (1.07) is now available

A new version of gotcloud, 1.07 is now available. Sorry for the delay in releasing a new version. I

unread,

Announcement

New Version (1.07) is now available

A new version of gotcloud, 1.07 is now available. Sorry for the delay in releasing a new version. I

7/3/13

GotCloud

4/19/13

Announcement

New Version (1.06) is now available

A new version of gotcloud, 1.06 is now available. I have also created a wiki page that describes the

unread,

Announcement

New Version (1.06) is now available

A new version of gotcloud, 1.06 is now available. I have also created a wiki page that describes the

4/19/13

GotCloud, Mary Kate Wing2

3/25/13

Announcement

New Version of GotCloud Available

As a followup to my previous email, I forgot to mention a few things: This latest version is: 1.03a.

unread,

Announcement

New Version of GotCloud Available

As a followup to my previous email, I forgot to mention a few things: This latest version is: 1.03a.

3/25/13

GotCloud

3/8/13

Announcement

Welcome to the GotCloud Google Group!

Welcome to the GotCloud Google Group. This week we held our first tutorial on GotCloud at IBG

unread,

Announcement

Welcome to the GotCloud Google Group!

Welcome to the GotCloud Google Group. This week we held our first tutorial on GotCloud at IBG

3/8/13