how to analyze the microarray data in non-supported species

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ling

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Sep 4, 2010, 3:48:28 PM9/4/10
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Dear Sir/Madam,
I have some questions when I using GenMAPP analyze my microarray data
at my first time. The problem 1 is the accessory files (Gene Database
and pathway MAPPs) could be downloaded but could not be extracted.
Since the message of “The NTVDM CPU has encountered an illegal
instruction…” will appear and the process will closed. The problem 2
is I found that there is no information about for the Aedes aegypti
mosquito in Gene dataset, that is my interested species. Especially,
the pathway regulated its immunity system has attract my most
attention. However, there is no support information in GenMAPP’s data
on line. Whether it means that I should creating a GenMAPP database
for it? If so, how to achieve that? How to get the related
information?
Thanks for your help.
Best wishes.
Ling

GenMAPP Support

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Sep 7, 2010, 1:45:01 PM9/7/10
to GenMAPP
Hello Ling,

I'm sorry you're having problems with the accessory files. Although we
haven't experienced this partical error before, the extraction doesn't
always work on all systems. If you let me know which files you are
interested in, I can post them as regular zip files in our alternative
download area.

Regarding Aedes aegypti, we don't yet support this species. However,
since this species is part of Ensembl, it is possible for us to add it
to our next database build, meaning it would be supported in PathVisio
(www.pathvisio.org) and WikiPathways (wikipathways.org). We could also
convert any existing KEGG pathway content for Aedes to the PathVisio/
WikiPathways format.

Regards,

Kristina
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