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FIELDimageR: A R package to analyze orthomosaic images from field trials.

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Welcome to the FIELDimageR pipeline forum

This discussion group provides an online source of information about the FIELDimageR package. The pipeline scripts and further information, as well as links to the original publication, can be found at the FIELDimageR Github page, https://github.com/filipematias23/FIELDimageR

FIELDimageR is a R package to analyze orthomosaic images from agricultural field trials. This package is a compilation of functions to analyze pos-mosaicking images from research fields, and allows to: crop the image; remove soil effect; build vegetation indices; rotate the image; build the plot shapefile; extract information for each plot; and evaluate stand count, canopy percentage, and plant height. It is a complete pipeline developed primarily to support curation, data extraction, research, and breeding programs wishing to utilize images for the cost-effective phenome-wide characterization of plant resources.

Please try to use informative subject lines for queries/comments!
For bug reports please include as much information as possible including any error messages.

Thank you !!!

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4/28/20

Changing functions name (from version 0.1.7): polygonShape=fieldPolygon, indices=fieldIndex, and getInfo=fieldInfo

Hi everyone, In order to improve the package FIELDimageR, from version 0.1.7 we will change the name

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Changing functions name (from version 0.1.7): polygonShape=fieldPolygon, indices=fieldIndex, and getInfo=fieldInfo

Hi everyone, In order to improve the package FIELDimageR, from version 0.1.7 we will change the name

4/28/20

Ahasanul Hoque, fmatias5

Aug 28

Disease index counting error

Hi Filipe, Thank you for providing the codes. It's working. I need little help in interpreting

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Disease index counting error

Hi Filipe, Thank you for providing the codes. It's working. I need little help in interpreting

Aug 28

Aug 21

Hi!! I wanted to ask something simple. Basically, I had a doubt about what would be the best way to

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Hi!! I wanted to ask something simple. Basically, I had a doubt about what would be the best way to

Aug 21

Jun 3

Hello I am getting this error when running the field index function. I am unsure how to resolve this

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Hello I am getting this error when running the field index function. I am unsure how to resolve this

Jun 3

Alexandre Santos (ASANTOS), Filipe Matias3

12/18/24

Remove soil in orthomosaic of DJI Mavic 3 Multispectral

Hi Filipe, Thank you very much for the suggestion code it helps a lot. Best wishes, Alexandre Em qua.

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Remove soil in orthomosaic of DJI Mavic 3 Multispectral

Hi Filipe, Thank you very much for the suggestion code it helps a lot. Best wishes, Alexandre Em qua.

12/18/24

10/30/24

Custom X and Y plot sizes do not match actual measurements

When trying to create a plot using custom X and Y dimensions, it seems like the measurements that are

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Custom X and Y plot sizes do not match actual measurements

When trying to create a plot using custom X and Y dimensions, it seems like the measurements that are

10/30/24

Martin Gejl, … Jose Menes11

10/8/24

FieldShape problem

I work everything in EPSG 4326, just in case I also tried in plane coordinates. Just in case I tried

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FieldShape problem

I work everything in EPSG 4326, just in case I also tried in plane coordinates. Just in case I tried

10/8/24

Marcelo Barbosa

8/28/24

fieldSegment in R - error

Hi everybody, I'm getting an error when trying to segment a multispectral orthomosaic. I've

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fieldSegment in R - error

Hi everybody, I'm getting an error when trying to segment a multispectral orthomosaic. I've

8/28/24

kamal preet, … Martin Gejl4

8/20/24

Field Count Error.

Thx the installing EBImage solved the problem fredag den 14. juni 2024 kl. 16.44.10 UTC+2 skrev

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Field Count Error.

Thx the installing EBImage solved the problem fredag den 14. juni 2024 kl. 16.44.10 UTC+2 skrev

8/20/24

7/19/24

FieldInterpolate error message

Hi I get the following error message when I try to make a interpolation of dsm.tiff Anyone who know

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FieldInterpolate error message

Hi I get the following error message when I try to make a interpolation of dsm.tiff Anyone who know

7/19/24

6/27/24

Hi All I get a error message I can't solve when using fieldSegment I have tried to reinstall

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Hi All I get a error message I can't solve when using fieldSegment I have tried to reinstall

6/27/24

Marcelo Barbosa, fmatias3

6/18/24

Standard deviation values from an orthomosaic

Thank you so much. It worked. Bests, Marcelo On Tue, Jun 18, 2024 at 2:51 PM fmatias <

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Standard deviation values from an orthomosaic

Thank you so much. It worked. Bests, Marcelo On Tue, Jun 18, 2024 at 2:51 PM fmatias <

6/18/24

6/18/24

FieldInterpolate

Problem solved I may have had to few points tirsdag den 18. juni 2024 kl. 08.47.01 UTC+2 skrev Martin

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FieldInterpolate

Problem solved I may have had to few points tirsdag den 18. juni 2024 kl. 08.47.01 UTC+2 skrev Martin

6/18/24

6/9/24

Pollen count error

Hi, I am using fieldimageR for pollen count but getting below mentioned error message (red colored,

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Pollen count error

Hi, I am using fieldimageR for pollen count but getting below mentioned error message (red colored,

6/9/24

5/28/24

QGIS FieldImageR height moddels

Hi How do I use my removesoil mask on my Height moddels in QGIS version of FieldImageR. I can do it

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QGIS FieldImageR height moddels

Hi How do I use my removesoil mask on my Height moddels in QGIS version of FieldImageR. I can do it

5/28/24

Martin Gejl, fmatias3

5/7/24

fieldcount getting the data

Hi Filipe It help a little, I now have something that work like in the old version, but missing some

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fieldcount getting the data

Hi Filipe It help a little, I now have something that work like in the old version, but missing some

5/7/24

Jose Menes, Dr P S Pawar5

4/15/24

Index calculation problem

Hello again! I'm still having the same problem. Just in case I share it again with the excel data

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Index calculation problem

Hello again! I'm still having the same problem. Just in case I share it again with the excel data

4/15/24

Jose Menes, … fmatias6

4/14/24

Fieldshape qgis

thank you so much! We are using it in a couple of agricultural experimental stations in my country (

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Fieldshape qgis

thank you so much! We are using it in a couple of agricultural experimental stations in my country (

4/14/24

Martin Gejl, … fmatias3

4/14/24

Plot size error in placement

Hey there, fieldShape_render XY is working for diagonal field trials now! Everyone needs to install

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Plot size error in placement

Hey there, fieldShape_render XY is working for diagonal field trials now! Everyone needs to install

4/14/24

kamal preet, pspawar5

4/10/24

Field segment with Random forest

Okay, sounds good. Thanks for your input! On Tuesday, April 9, 2024 at 5:35:31 pm UTC-5 pspa...@gmail

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Field segment with Random forest

Okay, sounds good. Thanks for your input! On Tuesday, April 9, 2024 at 5:35:31 pm UTC-5 pspa...@gmail

4/10/24

Martin Gejl, Dr P S Pawar2

4/3/24

Error message fieldInfo_extra

Hi... We have recently modified the fieldInfo_extra function. It utilizes the the functionality from

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Error message fieldInfo_extra

Hi... We have recently modified the fieldInfo_extra function. It utilizes the the functionality from

4/3/24

Stewart Morley, Dr P S Pawar2

2/16/24

FieldMask not loading in QGIS

Hello Stewart, Thanks for bringing the issue with fieldMask function to our attention. We have just

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FieldMask not loading in QGIS

Hello Stewart, Thanks for bringing the issue with fieldMask function to our attention. We have just

2/16/24

12/9/23

Re: FIELDimageR: Uploading image

Olá Kauee, Obrigado pelo contato … testamos em vários tipos de imagem e computadores antes de

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Re: FIELDimageR: Uploading image

Olá Kauee, Obrigado pelo contato … testamos em vários tipos de imagem e computadores antes de

12/9/23

Prabhath Lokuruge, fmatias3

12/5/23

Shapefile plot number assigning error

Make sense. Thank you Filipe! On Tuesday, December 5, 2023 at 5:30:54 AM UTC-6 fmatias wrote: Hi

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Shapefile plot number assigning error

Make sense. Thank you Filipe! On Tuesday, December 5, 2023 at 5:30:54 AM UTC-6 fmatias wrote: Hi

12/5/23

Adery Faustino, pspawar2

12/5/23

I'm facing this problem when creating the shapefile, I've already tried other functions, but no results.

Hi Adery, It is a warning message and there is no issue with it. Are you encountering any error

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I'm facing this problem when creating the shapefile, I've already tried other functions, but no results.

Hi Adery, It is a warning message and there is no issue with it. Are you encountering any error

12/5/23

Artūrs Katamadze, … Stewart Morley7

11/30/23

Unable to visualize fieldShape

Was this ever resolved or explained? On Monday, November 13, 2023 at 12:59:45 PM UTC-6 artu...@gmail.

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Unable to visualize fieldShape

Was this ever resolved or explained? On Monday, November 13, 2023 at 12:59:45 PM UTC-6 artu...@gmail.

11/30/23

Artūrs Katamadze, fmatias7

11/18/23

Error in seq.default(x$from, x$to) : 'to' must be a finite number

Hi Arturs, The software that I have here did not work for your images ... I am sorry! Does the

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Error in seq.default(x$from, x$to) : 'to' must be a finite number

Hi Arturs, The software that I have here did not work for your images ... I am sorry! Does the

11/18/23

Stewart Morley, … Dr P S Pawar12

11/14/23

error creating shapefile

That seems to have worked! I can extract canopy coverage data from stills now! It does seem to create

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error creating shapefile

That seems to have worked! I can extract canopy coverage data from stills now! It does seem to create

11/14/23

panos pp, … pspawar7

11/9/23

FieldMask error

Hello! The 'fieldMask' function now requires a 'spatRaster' terra object instead of a

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FieldMask error

Hello! The 'fieldMask' function now requires a 'spatRaster' terra object instead of a

11/9/23

Abdallah Yussuf Ali Abdelmajeed, pspawar11

11/8/23

Installing FieldImage.Extra Issue

Thank you very much. Definitely, I'll start exploring it with deferent UAV data. On Thu, Nov 9,

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Installing FieldImage.Extra Issue

Thank you very much. Definitely, I'll start exploring it with deferent UAV data. On Thu, Nov 9,

11/8/23

Martin Gejl, fmatias2

10/28/23

Field shape plot area

Hi Martin, You can creat the plot grid using fieldShape_render (https://github.com/filipematias23/

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Field shape plot area

Hi Martin, You can creat the plot grid using fieldShape_render (https://github.com/filipematias23/

10/28/23

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