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marcel...@gmail.com
6/12/22
Cropping stacks with volume bounding box
Hi everyone, I've made a cubed volume in the Volume Manager and I would like to crop this exact
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Cropping stacks with volume bounding box
Hi everyone, I've made a cubed volume in the Volume Manager and I would like to crop this exact
6/12/22
Tom Kazimiers
12/21/21
New CATMAID release: 2021.12.21
Hi all, We just released a new CATMAID version, 2021.12.21 https://github.com/catmaid/CATMAID/
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New CATMAID release: 2021.12.21
Hi all, We just released a new CATMAID version, 2021.12.21 https://github.com/catmaid/CATMAID/
12/21/21
jasek...@gmail.com
3/16/21
anonymize data
Hi everyone, I noticed that in public catmaid instances don't show which user added a node,
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anonymize data
Hi everyone, I noticed that in public catmaid instances don't show which user added a node,
3/16/21
Marcel Sayre
,
Tom Kazimiers
5
11/22/20
Exporting transparent views from 3D Viewer
Hey Tom, that's great to hear, thanks for following up on this! Cheers, Marcel On Thursday,
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Exporting transparent views from 3D Viewer
Hey Tom, that's great to hear, thanks for following up on this! Cheers, Marcel On Thursday,
11/22/20
marcel...@gmail.com
8/26/20
Importing skeleton names and renaming skeletons
Hi everyone, I'm unable to import neuron names/annotations when uploading skeletons to catmaid
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Importing skeleton names and renaming skeletons
Hi everyone, I'm unable to import neuron names/annotations when uploading skeletons to catmaid
8/26/20
Marcel Sayre
, …
Tom Kazimiers
15
6/1/20
Multi-Resolution Stacks
Hi Tom, Great, that would be fantastic. Thanks for that! Cheers, Marcel On Monday, June 1, 2020 at 12
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Multi-Resolution Stacks
Hi Tom, Great, that would be fantastic. Thanks for that! Cheers, Marcel On Monday, June 1, 2020 at 12
6/1/20
Marcel Sayre
, …
Tom Kazimiers
5
4/23/20
Translating Tracing Data
Hi Marcel, Good to hear this worked for you! To also share this information with the mailing list, I
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Translating Tracing Data
Hi Marcel, Good to hear this worked for you! To also share this information with the mailing list, I
4/23/20
Tom Kazimiers
2/16/20
New CATMAID release: 2020.02.15
Hi all, We just released a new CATMAID version, 2020.02.15: https://github.com/catmaid/CATMAID/
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New CATMAID release: 2020.02.15
Hi all, We just released a new CATMAID version, 2020.02.15: https://github.com/catmaid/CATMAID/
2/16/20
John Roche
, …
Tom Kazimiers
4
10/21/19
Restoring Catmaid data
Hi Mark and John, On Mon, Oct 21, 2019 at 02:08:38PM +0100, Mark Longair wrote: >John Roche <
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Restoring Catmaid data
Hi Mark and John, On Mon, Oct 21, 2019 at 02:08:38PM +0100, Mark Longair wrote: >John Roche <
10/21/19
Steph Nowotarski
,
Tom Kazimiers
3
10/11/19
.owl file formats for ontologies?
Thanks Tom! For now, we'll probably just convert to YAML for what we need. Steph On Wed, Oct 9,
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.owl file formats for ontologies?
Thanks Tom! For now, we'll probably just convert to YAML for what we need. Steph On Wed, Oct 9,
10/11/19
youmin Wu
, …
Tom Kazimiers
4
9/27/19
Importing swc data from import widget
Hi Youmin, On Sat, Sep 07, 2019 at 02:45:54AM -0700, youmin Wu wrote: >And reimported the swc file
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Importing swc data from import widget
Hi Youmin, On Sat, Sep 07, 2019 at 02:45:54AM -0700, youmin Wu wrote: >And reimported the swc file
9/27/19
John Roche
,
Tom Kazimiers
18
9/27/19
Installing CATMAID issue
Hi John, On Mon, Sep 16, 2019 at 09:20:43AM -0700, John Roche wrote: >changed around some stuff in
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Installing CATMAID issue
Hi John, On Mon, Sep 16, 2019 at 09:20:43AM -0700, John Roche wrote: >changed around some stuff in
9/27/19
John Roche
,
Andrew Champion
2
9/27/19
Using the N5 tile source
Hi John, It's somewhat surprising if you have an N5 volume, as it's not yet widely used. The
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Using the N5 tile source
Hi John, It's somewhat surprising if you have an N5 volume, as it's not yet widely used. The
9/27/19
John Roche
3
9/19/19
Tiling tiff files in Catmaid
Here's another error I'm getting ./tile_stack test2.tif 256 192 mkdir: cannot create
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Tiling tiff files in Catmaid
Here's another error I'm getting ./tile_stack test2.tif 256 192 mkdir: cannot create
9/19/19
youmin Wu
9/6/19
Import data with tile source type 3 "HDF5 via CATMAID backend"
Hi all, I tried to import data with tile source type 3 "HDF5 via CATMAID backend", but
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Import data with tile source type 3 "HDF5 via CATMAID backend"
Hi all, I tried to import data with tile source type 3 "HDF5 via CATMAID backend", but
9/6/19
youmin Wu
,
Tom Kazimiers
3
9/5/19
Create projects with source type 1 "File-based image stack"
Hi Tom, Thank you very much for your detailed explanation! Yes, you are right I misunderstand the
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Create projects with source type 1 "File-based image stack"
Hi Tom, Thank you very much for your detailed explanation! Yes, you are right I misunderstand the
9/5/19
Marcel Sayre
, …
Gregory Jefferis
5
9/4/19
Batch import SWC files
Hello Greg and Chris, Thank you both for your quick responses! Natverse, the catnat packages, and the
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Batch import SWC files
Hello Greg and Chris, Thank you both for your quick responses! Natverse, the catnat packages, and the
9/4/19
Marcel Sayre
, …
Sanja Jasek
15
9/2/19
Importing data: stack mirror error
Hey Sanja and Tom, Sanja, I typically access my server using localhost/catmaid/, but I've just
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Importing data: stack mirror error
Hey Sanja and Tom, Sanja, I typically access my server using localhost/catmaid/, but I've just
9/2/19
卢志颖
, …
youmin Wu
5
8/24/19
Import new data into CATMAID
Hi 卢志颖, I also had this problem when I import a new project. I've used the scripts for tile and
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Import new data into CATMAID
Hi 卢志颖, I also had this problem when I import a new project. I've used the scripts for tile and
8/24/19
Ivan Diaz
,
Tom Kazimiers
2
8/15/19
Default Projects Blank Screen
Hi Ivan, On Tue, Aug 13, 2019 at 05:38:33AM -0700, Ivan Diaz wrote: >[Empty image layers in Docker
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Default Projects Blank Screen
Hi Ivan, On Tue, Aug 13, 2019 at 05:38:33AM -0700, Ivan Diaz wrote: >[Empty image layers in Docker
8/15/19
Tom Kazimiers
6/21/19
New CATMAID release: 2019.06.20
Hi all, We just released a new CATMAID version, 2019.06.20: https://github.com/catmaid/CATMAID/
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New CATMAID release: 2019.06.20
Hi all, We just released a new CATMAID version, 2019.06.20: https://github.com/catmaid/CATMAID/
6/21/19
Daniel Witvliet
,
Albert Cardona
6
3/29/19
Debugging a slow CATMAID interface
I found the underlying issue. Although it turns out not to be an actual issue, but a new feature. The
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Debugging a slow CATMAID interface
I found the underlying issue. Although it turns out not to be an actual issue, but a new feature. The
3/29/19
Greg Jefferis
,
Albert Cardona
7
3/11/19
TrakEM2 pipes -> CATMAID meshes
Thanks so much, Albert — I didn't get to try today (short day) but I'm sure I can work
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TrakEM2 pipes -> CATMAID meshes
Thanks so much, Albert — I didn't get to try today (short day) but I'm sure I can work
3/11/19
Tom Kazimiers
11/9/18
New CATMAID release: 2018.11.09
Hi all, We just released a new CATMAID version, 2018.11.09: https://github.com/catmaid/CATMAID/
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New CATMAID release: 2018.11.09
Hi all, We just released a new CATMAID version, 2018.11.09: https://github.com/catmaid/CATMAID/
11/9/18
Sanja Jasek
,
Tom Kazimiers
6
11/8/18
attachments
Hi Tom, On Thu, 8 Nov 2018 at 05:01, Tom Kazimiers <t...@voodoo-arts.net> wrote: You are welcome
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attachments
Hi Tom, On Thu, 8 Nov 2018 at 05:01, Tom Kazimiers <t...@voodoo-arts.net> wrote: You are welcome
11/8/18
Sasha Rayshubskiy
,
Tom Kazimiers
2
10/2/18
Toggling between physical (nanometers) and voxel coordinates
Hi Sasha, On Mon, Oct 01, 2018 at 07:02:26PM -0700, Sasha Rayshubskiy wrote: >Is it possible to
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Toggling between physical (nanometers) and voxel coordinates
Hi Sasha, On Mon, Oct 01, 2018 at 07:02:26PM -0700, Sasha Rayshubskiy wrote: >Is it possible to
10/2/18
Gregory Jefferis
,
Andrew Champion
3
8/8/18
CATMAID server version string
Thanks, Andrew. I forgot to fetch new tags for my repo – that was silly. So now I get: 2018.04.15-288
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CATMAID server version string
Thanks, Andrew. I forgot to fetch new tags for my repo – that was silly. So now I get: 2018.04.15-288
8/8/18
Gregory Jefferis
, …
Tom Kazimiers
5
7/29/18
label id for label name
Hi Greg, Chris is right, there was so far no convenient way to get this information. Therefore I
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label id for label name
Hi Greg, Chris is right, there was so far no convenient way to get this information. Therefore I
7/29/18
Tom Kazimiers
2
7/21/18
New CATMAID release: 2018.07.19
On Sat, Jul 21, 2018 at 11:13:11AM -0400, Tom Kazimiers wrote: >We released a new CATMAID version
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New CATMAID release: 2018.07.19
On Sat, Jul 21, 2018 at 11:13:11AM -0400, Tom Kazimiers wrote: >We released a new CATMAID version
7/21/18
Gregory Jefferis
, …
Tom Kazimiers
7
5/29/18
list nodes / skids matching a given tag
On Mon, May 28, 2018 at 11:50:13PM +0100, Gregory Jefferis wrote: > >> Sure, no problem! I
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list nodes / skids matching a given tag
On Mon, May 28, 2018 at 11:50:13PM +0100, Gregory Jefferis wrote: > >> Sure, no problem! I
5/29/18