CANAPE

[Editor PDCA]

Dear Shawn,

I am using the latest version of Biodiverse available for download, 4.3 which is supposed to provide the results of CANAPE test automatically when randomization is done for relative phylogenetic endemism. However, instead of five CANAPE classes I get only the p-rank and z-score plotting.

Why is it so?

Regards,

Sergei

[Shawn Laffan]

Hello Sergei,

The CANAPE classes are only generated when both the PE_WE and RPE2 indices have been calculated. 

Can you double check those are in the results? 

Regards,

Shawn.

---

From: biodiver...@googlegroups.com <biodiver...@googlegroups.com> on behalf of Editor PDCA <pdcae...@gmail.com>
Sent: Thursday, 21 March 2024 02:01
To: Biodiverse Users <biodiver...@googlegroups.com>
Subject: [Biodiverse-Users: 560] CANAPE

 

--
You received this message because you are subscribed to the Google Groups "Biodiverse Users" group.
To unsubscribe from this group and stop receiving emails from it, send an email to biodiverse-use...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/biodiverse-users/46b5533b-3e01-41ae-aa89-a051eac38d5fn%40googlegroups.com.

[Editor PDCA]

Dear Shawn,
Many thanks for your clarification. Now it works. I think this
important detail about how to do the CANAPE analysis should be made
explicit in the manual or a blog.
Regards,
Sergei

ср, 20 мар. 2024 г. в 21:52, 'Shawn Laffan' via Biodiverse Users
<biodiver...@googlegroups.com>:

> To view this discussion on the web visit https://groups.google.com/d/msgid/biodiverse-users/SYBPR01MB71964CB39A07DC4B1F65A338CA332%40SYBPR01MB7196.ausprd01.prod.outlook.com.

[Shawn Laffan]

Hello Sergei,

Good to hear it works. 

The requirement is noted in the blog, although it could perhaps be made more explicit with a screenshot of the selected calculations.  I'll see if I can get some time to do that.

https://biodiverse-analysis-software.blogspot.com/2022/10/biodiverse-now-calculates-canape-for-you.html

Regards,

Shawn.

---

From: biodiver...@googlegroups.com <biodiver...@googlegroups.com> on behalf of Editor PDCA <pdcae...@gmail.com>

Sent: Thursday, 21 March 2024 07:40
To: biodiver...@googlegroups.com <biodiver...@googlegroups.com>
Subject: Re: [Biodiverse-Users: 561] CANAPE

 

To view this discussion on the web visit https://groups.google.com/d/msgid/biodiverse-users/CAOJjPW5kM10wuNn-FEVQavXTbzXt74tLHYBzu2bn0FXxcOhY%2BA%40mail.gmail.com.