CFP: SWAT4LS (2008 International Workshop on Semantic Web Applications and Tools for Life Sciences )
0 views
Skip to first unread message
Andrea Splendiani
Aug 1, 2008, 10:51:53 AM8/1/08
to BioPAX-Manchester
[ our apologies should you receive this message more than one time ]
International Workshop on
Semantic Web Applications and Tools for Life Sciences (SWAT4LS)
28th November 2008, Edinburgh, UK
http://www.swat4ls.org
=====================================================================
In Co-operation with:
- National Cancer Research Institute, Genova, Italy
- Biotechnology Centre, TU Dresden, Dresden, Germany
- School of Mathematical and Computer Sciences, Heriot-Watt
University,
Edinburgh, Scotland, United Kingdom
- Université de Rennes 1, Rennes, France
- SeaLife Project, European Commission Information Society and Media
- National e-Science Center, Edinburgh, Scotland, United Kingdom
- Laboratory for Interdisciplinary Technologies in Bioinformatics
(LITBIO),
Italy
=====================================================================
Overview
--------
The workshop is organized in sessions and open discussions. Invited
speakers
will present state-of-the-art, provocative lectures on the workshop's
main
topic, while a number of submissions will be accepted as oral
presentations
and posters on all workshop's topics.
Workshop Description
--------------------
Semantic Web technologies, tools and applications are starting to
emerge in
Life Sciences. In recent years, systems have been introduced and an
increasing interest among researchers is arising. This workshop will
provide
a venue to present and discuss benefits and limits of the adoption of
these
technologies and tools in biomedical informatics and computational
biology.
It will showcase experiences, information resources, tools development
and
applications. It will bring together researchers, both developers and
users,
from the various fields of Biology, Bioinformatics and Computer
Science, to
discuss goals, current limits and some real use cases for Semantic Web
technologies in Life Sciences.
Topics of Interest
------------------
Topics of interest include, but are not limited to:
* Standards, Technologies, Tools for the Semantic Web
o Semantic Web standards (RDF, OWL, ...)
o RDF/OWL, SKOS, .... and their applicability ot
bioinformatics
o RDF Schemas and Query systems
o Biomedical Ontologies and related tools
o Formal approaches to large biomedical controlled
terminologies
and vocabularies
* Systems for a Semantic Web for Bioinformatics
o Bio-ontologies, RDF stores, Semantic web Services
o RDF repositories and query systems for life sciences
o Semantically aware biomedical Web Services
o Semantic Biological Data Integration Systems
* Existing and perspective applications of the Semantic Web for
Bioinformatics
o Semantic browsers, Semantic collaborative research
o Case studies, use cases, and scenarios
o Semantic Web applications in life sciences
Workshop Venue and Format
------------------------
The workshop will take place in Edinburgh, Scotland, on 28 November
2008,
and is hosted by the UK's National e-Science Centre (NeSC).
SWAT4LS will be a one-day workshop and will consist of two invited
talks,
regular paper and poster presentations. The workshop will conclude
with a
panel discussion on the strength and weaknesses of the Semantic Web
for the
Life Sciences.
Type of contributions
----------------------
The following possible original contributions are sought:
* Oral communications (regular papers)
* Posters
* Software demos
All accepted oral communications and posters will be published with
CEUR.
Deadlines
---------
* Submission deadline (both papers and posters): 30 September 2008
* Notification of acceptance: 20 October 2008
* Camera-ready submission: 3 November 2008
Instructions
-------------
All papers and posters must be in English and must be submitted
through the
EasyChair review system at
http://www.easychair.org/conferences/?conf=swat4ls. Please upload all
submissions as PDF files in LNCS format
(http://www.springer.de/comp/lncs/authors.html). To ensure high
quality,
submitted papers will be carefully peer-reviewed by at least three
members
of the Scientific Committee.
- Submissions for Oral communications should be between 10 and 15
pages.
- Posters submissions should be between 4 and 8 pages.
- Software demo proposals should be between 4 and 8 pages.
We will pursue the publication of a selection of revised papers to a
high-
quality journal.
Workshop Chairs
----------------
Albert Burger, School of Mathematical and Computer Sciences, Heriot-
Watt
University, and Human Genetics Unit, Medical Research Council,
Edinburgh,
Scotland, United Kingdom
Adrian Paschke, Biotechnology Centre, TU Dresden, Dresden, Germany
Paolo Romano, Bioinformatics, National Cancer Research Institute,
Genova,
Italy
Andrea Splendiani, Medical Informatics Department, University of
Rennes 1,
Rennes, France
Program Committee (to be completed)
-----------------------------------
- Christopher Baker, Knowledge Discovery Department, Institute for
Infocomm
Research (I2R), Singapore
- Pedro Barahona, Department of Informatics, New University of Lisboa,
Lisboa, Portugal
- Liliana Barrio-Alvers, Transinsight GmbH, Dresden, Germany
- Virendrakumar C, Bhavsar, University of New Brunswick, Canada
- Olivier Bodenreider, National Library of Medicine, Bethesda, MD,
United
States of America
- Werner Ceusters, NY CoE in Bioinformatics and Life Sciences,
University at
Buffalo, Buffalo, NY, USA
- Marie-Dominique Devignes, LORIA, Vandoeuvre les Nancy, France
- C. Maria Keet, Faculty of Computer Science, Free University of
- Bozen-Bolzano, Bolzano, Italy
- Ludwig Krippahl, Department of Informatics, New University of
Lisboa,
Lisboa, Portugal
- Patrick Lambrix, Department of Computer and Information Science,
Linköping
University, Linköping, Sweden
- Stephan Philippi, Institute for Software Technology, University of
Koblenz-Landau, Koblenz, Germany
- Scott Marshall, Informatics Institute, University of Amsterdam,
Amsterdam,
The Netherlands
- Alan Ruttenberg, Science Commons, Boston, USA
- Kei Cheung, Yale Center for Medical Informatics, Yale, New Haven,
USA
- Tetsuro Toyoda, Bioinformatics And Systems Engineering (BASE)
division,
RIKEN, Yokohama, Japan
- Luca Toldo, Research Knowledge Management, MerckSerono, Darmstadt,
Germany
- Nigam Shah,Center for Biomedical Informatics Research, Stanford, USA
- Michael Dumontier, Department of Biology, School of Computer
Science,
Carleton University, Ottawa, Ontario, Canada
- Matthias Samwald, DERI Galway, Galway, Ireland and Semantic Web
Company,
Vienna, Austria
- Graham Kemp, Computer Science and Engineering, Chalmers University
of
Technology, Sweden
- Robert Stevens, School of Computer Science, University of
Manchester,
Manchester, United Kingdom
- Michael Schröder, Biotechnology Centre, TU Dresden, Dresden, Germany
- Jano van Hemert, National e-Science Centre, University of Edinburgh,
Edinburgh, United Kingdom
(... more to be confirmed)
Workshop Web Pages: www.swat4ls.org
Contact Email Address: in...@swat4ls.org
International Workshop on
Semantic Web Applications and Tools for Life Sciences (SWAT4LS)
28th November 2008, Edinburgh, UK
http://www.swat4ls.org
=====================================================================
In Co-operation with:
- National Cancer Research Institute, Genova, Italy
- Biotechnology Centre, TU Dresden, Dresden, Germany
- School of Mathematical and Computer Sciences, Heriot-Watt
University,
Edinburgh, Scotland, United Kingdom
- Université de Rennes 1, Rennes, France
- SeaLife Project, European Commission Information Society and Media
- National e-Science Center, Edinburgh, Scotland, United Kingdom
- Laboratory for Interdisciplinary Technologies in Bioinformatics
(LITBIO),
Italy
=====================================================================
Overview
--------
The workshop is organized in sessions and open discussions. Invited
speakers
will present state-of-the-art, provocative lectures on the workshop's
main
topic, while a number of submissions will be accepted as oral
presentations
and posters on all workshop's topics.
Workshop Description
--------------------
Semantic Web technologies, tools and applications are starting to
emerge in
Life Sciences. In recent years, systems have been introduced and an
increasing interest among researchers is arising. This workshop will
provide
a venue to present and discuss benefits and limits of the adoption of
these
technologies and tools in biomedical informatics and computational
biology.
It will showcase experiences, information resources, tools development
and
applications. It will bring together researchers, both developers and
users,
from the various fields of Biology, Bioinformatics and Computer
Science, to
discuss goals, current limits and some real use cases for Semantic Web
technologies in Life Sciences.
Topics of Interest
------------------
Topics of interest include, but are not limited to:
* Standards, Technologies, Tools for the Semantic Web
o Semantic Web standards (RDF, OWL, ...)
o RDF/OWL, SKOS, .... and their applicability ot
bioinformatics
o RDF Schemas and Query systems
o Biomedical Ontologies and related tools
o Formal approaches to large biomedical controlled
terminologies
and vocabularies
* Systems for a Semantic Web for Bioinformatics
o Bio-ontologies, RDF stores, Semantic web Services
o RDF repositories and query systems for life sciences
o Semantically aware biomedical Web Services
o Semantic Biological Data Integration Systems
* Existing and perspective applications of the Semantic Web for
Bioinformatics
o Semantic browsers, Semantic collaborative research
o Case studies, use cases, and scenarios
o Semantic Web applications in life sciences
Workshop Venue and Format
------------------------
The workshop will take place in Edinburgh, Scotland, on 28 November
2008,
and is hosted by the UK's National e-Science Centre (NeSC).
SWAT4LS will be a one-day workshop and will consist of two invited
talks,
regular paper and poster presentations. The workshop will conclude
with a
panel discussion on the strength and weaknesses of the Semantic Web
for the
Life Sciences.
Type of contributions
----------------------
The following possible original contributions are sought:
* Oral communications (regular papers)
* Posters
* Software demos
All accepted oral communications and posters will be published with
CEUR.
Deadlines
---------
* Submission deadline (both papers and posters): 30 September 2008
* Notification of acceptance: 20 October 2008
* Camera-ready submission: 3 November 2008
Instructions
-------------
All papers and posters must be in English and must be submitted
through the
EasyChair review system at
http://www.easychair.org/conferences/?conf=swat4ls. Please upload all
submissions as PDF files in LNCS format
(http://www.springer.de/comp/lncs/authors.html). To ensure high
quality,
submitted papers will be carefully peer-reviewed by at least three
members
of the Scientific Committee.
- Submissions for Oral communications should be between 10 and 15
pages.
- Posters submissions should be between 4 and 8 pages.
- Software demo proposals should be between 4 and 8 pages.
We will pursue the publication of a selection of revised papers to a
high-
quality journal.
Workshop Chairs
----------------
Albert Burger, School of Mathematical and Computer Sciences, Heriot-
Watt
University, and Human Genetics Unit, Medical Research Council,
Edinburgh,
Scotland, United Kingdom
Adrian Paschke, Biotechnology Centre, TU Dresden, Dresden, Germany
Paolo Romano, Bioinformatics, National Cancer Research Institute,
Genova,
Italy
Andrea Splendiani, Medical Informatics Department, University of
Rennes 1,
Rennes, France
Program Committee (to be completed)
-----------------------------------
- Christopher Baker, Knowledge Discovery Department, Institute for
Infocomm
Research (I2R), Singapore
- Pedro Barahona, Department of Informatics, New University of Lisboa,
Lisboa, Portugal
- Liliana Barrio-Alvers, Transinsight GmbH, Dresden, Germany
- Virendrakumar C, Bhavsar, University of New Brunswick, Canada
- Olivier Bodenreider, National Library of Medicine, Bethesda, MD,
United
States of America
- Werner Ceusters, NY CoE in Bioinformatics and Life Sciences,
University at
Buffalo, Buffalo, NY, USA
- Marie-Dominique Devignes, LORIA, Vandoeuvre les Nancy, France
- C. Maria Keet, Faculty of Computer Science, Free University of
- Bozen-Bolzano, Bolzano, Italy
- Ludwig Krippahl, Department of Informatics, New University of
Lisboa,
Lisboa, Portugal
- Patrick Lambrix, Department of Computer and Information Science,
Linköping
University, Linköping, Sweden
- Stephan Philippi, Institute for Software Technology, University of
Koblenz-Landau, Koblenz, Germany
- Scott Marshall, Informatics Institute, University of Amsterdam,
Amsterdam,
The Netherlands
- Alan Ruttenberg, Science Commons, Boston, USA
- Kei Cheung, Yale Center for Medical Informatics, Yale, New Haven,
USA
- Tetsuro Toyoda, Bioinformatics And Systems Engineering (BASE)
division,
RIKEN, Yokohama, Japan
- Luca Toldo, Research Knowledge Management, MerckSerono, Darmstadt,
Germany
- Nigam Shah,Center for Biomedical Informatics Research, Stanford, USA
- Michael Dumontier, Department of Biology, School of Computer
Science,
Carleton University, Ottawa, Ontario, Canada
- Matthias Samwald, DERI Galway, Galway, Ireland and Semantic Web
Company,
Vienna, Austria
- Graham Kemp, Computer Science and Engineering, Chalmers University
of
Technology, Sweden
- Robert Stevens, School of Computer Science, University of
Manchester,
Manchester, United Kingdom
- Michael Schröder, Biotechnology Centre, TU Dresden, Dresden, Germany
- Jano van Hemert, National e-Science Centre, University of Edinburgh,
Edinburgh, United Kingdom
(... more to be confirmed)
Workshop Web Pages: www.swat4ls.org
Contact Email Address: in...@swat4ls.org
Reply all
Reply to author
Forward
0 new messages