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wenbin guo

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Jun 20, 2019, 1:57:13 PM6/20/19

to 3D RNA-seq App user group

The 3D RNA-seq App docker image (https://3drnaseq.hutton.ac.uk/login) hosted by the JHI server currently does not work for Kallisto quantification output in format of abundance.h5. We are working on it to solve the problem. To run the 3D Analysis, users can 1) use Salmon quantification files ("quant.sf") or Kallisto quantification files in "abundance.tsv" as inputs of the 3D App; Or 2) run the 3D App through RStudio. Details can be found in the user manual: https://github.com/wyguo/ThreeDRNAseq/blob/master/vignettes/user_manuals/3D_RNA-seq_App_manual.md

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